Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00003 ATGAGTTTTATCACTACTCTTGCCGGGAACTTTTGGGATGATCCATTGGGGAACCCATGGTACTCCTTTACTACTTTCTATTATCCCACTGTGGCTCCTGCTCCTCCATCTTATTTTACTAAGATGGTATCAGAGCTCCATCCATGGAGCTCACCTCGCTTCAAGAAGAAGACTCGACGCTGTTTGAAGAAACCATCACTGTTCCCTGCGCACTCCATTCTTGCTGAAGCAACTACCACCGATGAATCTTCTTCTGCTGTTGCAATTATCGGTTCCTCTGCTCCTCCGGTTTCATTTTCAAGCCACACATACTCTTATGTGCCTTCGATTCCAGACTCGTCTTCTTCGAAAATTTCTGCTGCCTCTGCTGACTTCTTCTTCTTGCATCAAACTGATAAGGATTCCATAACAAAACTGGAATGGAATCCATCACCAGAACCTTTCCACTTTGGAAGCTTCGGTTCTCTAGATCTTCACCGCAAAGAGGAGGACGCTCCCGCCGGCGAGGACGAGGACACTGGAGTTCAAGTCGCTCCGATCATCAAACTCGAAATCGAAGTCACCCTAACCGCATGCGAGATCTTCGTCGCCGCTTGTCGCACCTCCTCCGGTAAGCCTCTAAGTTTCGCTCCCATCATCGTAAAGTCTGGTAACGTTTTTATAGTCGCCAAGCTTTGCTGCATTTCATCTGCTCAAATCCGAGCACAAGGACGTTTTTCATTTCAATGTGTTCGACATTTTGAACGCACTCACACTCATGTTGCTCCGTGGGTCCATGATCTCCATGGCATTTACTTGGCTCGCAATGCCTTTGTTTGGTACTCAGATTGTGTTCCACACCACCGTGAAAGGGAGGTTGCGGAACATCTGTTTGATCAAATGCTTGAAAGAAATATCCAGCAACTGTTTGTTATAAAGGATGTCCAGAAACTGTTCGATGTAATGTCTGAAGGAGAAAGTGTATTTGATGGATTCCTTTTTGCTGCTAAAGATGGATGTTATGATGGAATTACTTCCTTCACATTGACTGCTGGGATGCTTTATATCGGTAAGGCATGGTTGGAGCTTGTTACACTGTCATGTTCCTGTCAGCAAATGATTTCAGAGCTCCTGAAGAGCAAAAAGGAGATGAGTTTATATGAAGATCTGGTTGCTGCCTGGGTACTTGCAAAGCATGAGTGGTTGAGAAAGCGCCCTTTGGGTGAAGAACTAGTCAACAAATTGGGAAAACAGAAGATGTTCAGCTACTGTGCCTATGTTTTGTTCTTGCATTTCGGGACCTCAAGTGAATTTTTAGACCACCTTAGTGGCGTTGGTTCAGAACTGGTTGGTAGAAGATACATGTGTTCTATTCCAGCAACTACTGCATCTGCTATTATTCTTTGTAGTAAAATTGCACCTGGTATCCCTGTAAGATTTGGCGAGCCCAGCTCTTTATTGCTTGTATGCCAACATGCTTATAGTATTATAGACACCCCAGAGTTCATGGCACCAGAATTGTGTGAAGAAGAATACAATGAACTTGTTGATGTGTATTCATTTGGCATGTGTGTTTTTGAAATGTTCACATTTGAGTATCCATATAGTGAATGTTCTACTCTTGAACAGATATAG 1614 0.438 MSFITTLAGNFWDDPLGNPWYSFTTFYYPTVAPAPPSYFTKMVSELHPWSSPRFKKKTRRCLKKPSLFPAHSILAEATTTDESSSAVAIIGSSAPPVSFSSHTYSYVPSIPDSSSSKISAASADFFFLHQTDKDSITKLEWNPSPEPFHFGSFGSLDLHRKEEDAPAGEDEDTGVQVAPIIKLEIEVTLTACEIFVAACRTSSGKPLSFAPIIVKSGNVFIVAKLCCISSAQIRAQGRFSFQCVRHFERTHTHVAPWVHDLHGIYLARNAFVWYSDCVPHHREREVAEHLFDQMLERNIQQLFVIKDVQKLFDVMSEGESVFDGFLFAAKDGCYDGITSFTLTAGMLYIGKAWLELVTLSCSCQQMISELLKSKKEMSLYEDLVAAWVLAKHEWLRKRPLGEELVNKLGKQKMFSYCAYVLFLHFGTSSEFLDHLSGVGSELVGRRYMCSIPATTASAIILCSKIAPGIPVRFGEPSSLLLVCQHAYSIIDTPEFMAPELCEEEYNELVDVYSFGMCVFEMFTFEYPYSECSTLEQI. 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00003 537 Gene3D Transferase(Phosphotransferase) domain 1 464 537 - -
Seca4g00003 537 Pfam L-fucokinase 344 464 IPR012887 GO:0016772
Seca4g00003 537 ProSiteProfiles Protein kinase domain profile. 230 537 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g00003 537 SUPERFAMILY Protein kinase-like (PK-like) 485 536 IPR011009 -
Seca4g00003 537 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 484 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00003 Seca-Chr4 42819 44432 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00003 477 537 MAP Kinase Kinase Kinase AT3G51630 67.213 1.65e-20 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Seca4g00003 Fucokinase 2.7e-16 CL0536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00003 K25314 - gmx:100803620 212.231