Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11967 ATGAAACTACAGGCACATATTCCGGGGCAGATATCAGGACAGGTACCTAACCAAGCTGGGTCTCAGTTGCCTGGACTGACCCAACTGAATGGGAATTCCCTCCCTCCACAGATGCCACCTTTAGGTGGTGTGCCTCGATCAACCATTAATATGGACCCGGAATTTCTTAGAGCACGCTCATTTATTCAAGAGAAGATATGTGATATGTTATTGCAACGGCATCAGCAGCCAGTCACAGAAGTACAGAGAAGGAAGCTTAAGGATCTTGCAAAACGCCTGGAGGAGGGAATGTTAAAAGCTGCTGTCTCTAAGGAGGACTATATGAACTTGGATACACTAGAGAGCCGTTTATCTAATTTCCTTAGACGAGCATCTATGAATAATCATAACCAACAGTATCCACAGCTTGTTAGCTCTTCTCCAATTGGTACTATGATACCAACCCCTGGTATGTCACACATTCCAAATTCAAGCATGGTGGTTGCATCTTCTATTGATACCTCAATAATTTCTGCCAGCGGGTGTAGTAGCATAGGATCAACATCTTTCAATAGTGTAAATATGTTACCAGCTGGTGGCATGCTTGGCAGTTCCTTAAATAGATCTGATGGTTTGTCTAATGGATATCAGCAGTCTTCTACCAATTTTTCCGTTAGCTCGGGGGGAAACATGTCATCGATGGGGGTGCAGAGAATTGCAAGCCAGATGATTCCCACTCCAGGATTTACTGTCAGCAGTAATCACTCACATATGAATATAGATTCTTCAACTAATGGCAGTGCCTTTTCCAGTGTTGAGTCTACTATGGTATCACAGTCACAGCTGCAGCAGCAGAAGCAGAATGTTGGTGGCCAAAGTCATGTACTACAGAACCTCAGCAGCCAAGTGAGCAGTGGAATGAGATCTGGTTTACTACAAAAACCATTTGCAAACTCAAATGGTTCTATAAATAGTGGGGTAGGTTTGATTGGAAACAATATACAACTTGCAAATGAACTTGGCACTTCCGATGGTGATGGATATGGATTGAATAATGTTGACAGTTTTCCTTCTGGAAACTTTTATGCATCTGCAACATCCTCTAGGTCTATGATGAACACTCAGAACACAAATTCAGTAAAATTGCCATCAATACCCAAAACTAGCTCATTGATAAGTGGTCACTCAAATTTGCATGGTATGCAGCAAACTGCTCATATGAAGTCTCAAGCAATTAATCAGTTGGAAAAGTTGAATTTTCAGTCTTCATTGACTTCAAGAGATACCCTACTGCATTCTCAACAGCAGTATCAGCAGAGGCCCCAACAATTTCAACAGCCAGAGCAGTATGTGCAGCAACAATTTCAATTGAAGCTACAAAGTCAACAGCCTCAGCATTTGGTCAACAGTGATACTTTCAGTCAGTCTCAGTTGTCTTCCAATCTAGAAACCCAAGTGAAATCTGAGCATGGAATCGAACACCATAAAGATGTGCTCAATTCTCATGTTTCTGAACAGTTCCATATGTCTGAGATGCAGAGTCAGTACCAGCAGAACTCATCCGAAGAGTGCTCTAGGAGTGCTCAATATCTTTCATTTCCATCTGGTCAGCATGACTTAATCTCAACAACAACGCATAATTCGCAACAAATGTTGCACCCACACCAAGTGGTTGCAGAGTCTCAAAATAATTTTAGCTGTCTTAATGTTGGGGCACAATCCAAATCGGTAGGTCTAAATCAATGGCCTCAGGCACAAGATGGTAACCAAATACCTGACAATATTTCACATGACCAGCATCTCCACATGGATTTTCATCAAAGAATATCAGGGCAGGATGAAGCTCAATGCAATAATTTATCATCAGATGTATCTGTTGTTGGTCACGCTGTTGCTTCTAGAGGCTCTGAAGTGAAGGCTGAAGTTCCGACACATTTGGTACATGGAAAGCTTAGTGAGATGAAGATGGATAATGATAATGCAGATGATAAAATGTCTGATGGTGAACCTGTCAAATATGATAAGCCTGCTAATTTAGCTAGGCAAGAAAATATAAAAACAGAGAAAGAAGTTGGACAAGATAGGCAAGAAAATGTGATGCAGCCATCTGAAAATGCAGCTGGAACCAAGTCTGGTAAGCCAAAAATAAAGGGTGTCTCATTAACTGAATTATTTACCCCAGAGCAAGTCAGGGAACATATAACTGGCCTCAGGCAATGGGTTGGTCAAAGCAAATCAAAAGCAGAGAAGAATCAAGCAATGGAACACACTATGAGTGAGAATTCCTGTCAATTGTGTGCTGTCGAGAAGCTTACTTTTGAACCACCACCTATTTACTGCACAACTTGTGGGGTTCGCATTAAGCGAAATAATATGTATTATACCATGGGTACTGGTGATACACGGCATTATTTTTGTATTCCGTGCTATAATGATGCTCGTACAGAGAACATCATTGTTGATGGGACTCCCATTGCAAAGTCAAGATTGGAAAAGAAGAAGAATGATGAGGAAACAGAGGAATGGTGGGTTCAATGTGATAAATGTGAAGCGTGGCAACATCAAATTTGTGCTTTATTTAATGGTAGAAGAAATGATGGTGGACAAGCTGAATATACTTGTCCTAACTGCTATATTGAAGAGGTAGAAAGAGGAGAGCGCTTGCCCTTACCCCAAAGTGCTGTCCTTGGAGCAAAGGACTTGCCAAGGACTATTCTCAGTGATCATATAGAACAACGGTTGTTTAGACGACTAAAGCAAGAAAGACAAGAGAGGGCAAGGCTTCAAGGGAAAACTTATGATGAGGTACCTGGAGCTGAATGTCTTGTCATAAGAGTTGTGTCATCTGTTGACAAGAAGTTAGAAGTGAAACAGCGGTTTTTAGAGATTTTTCATGAAGAAAATTACCCAACAGAATTTCCATATAAATCCAAGGTAGTTTTGCTGTTTCAAAAGATTGAAGGTGTGGAAGTATGCCTATTTGGCATGTATGTTCAAGAATTTGGATCTGAATGCCAATTTCCCAATCAGCGCCGGGTGTATCTTTCATATTTGGACTCTGTGAAATACTTTAGGCCTGAGATTAAAACAGTGACTGGAGAGGCTCTTCGGACATTTGTTTACCATGAAATTCTGATTGGATACCTTGAATATTGCAAGAAACGTGGTTTTACAAGCTGCTATATTTGGGCCTGTCCTCCATTGAAGGGTGAAGATTATATTTTATATTGCCATCCAGAAATACAGAAAACACCAAAATCCGATAAGCTTCGTGAGTGGTATCTATCCATGTTAAGAAAAGCTGCCAAGGAGAGTATTGTGGTCGATATCACCAACCTATACGATCATTTCTTCATATCTACTGGTGAATGTAGGGCTAAGGTTACAGCTGCAAGACTCCCTTATTTTGATGGTGACTACTGGCCTGGGGCTGCAGAGGATTTGATTTATCAGCTTCGCCAAGAGGAAGATGGAAGAAAACAAAATAAGAAAGGAACAACAAAAAAGACTATAACAAAAAGGGCTTTAAAAGCATCTGGTCAGTCAGATCTTTCAGGAAACGCCTCAAAAGATCTGCTTCTCATGCACAAACTTGGTGAAACAATTTCCCCAATGAAGGAAGATTTTATTATGGTTCATTTGCAGCATGCATGCACCCACTGTTGTATTCTATTGGTGTCTGGCAATCGTTGGGTGTGCAACCAGTGCAAGAATTTTCAGATTTGTGATAAGTAA 3714 0.4082 MKLQAHIPGQISGQVPNQAGSQLPGLTQLNGNSLPPQMPPLGGVPRSTINMDPEFLRARSFIQEKICDMLLQRHQQPVTEVQRRKLKDLAKRLEEGMLKAAVSKEDYMNLDTLESRLSNFLRRASMNNHNQQYPQLVSSSPIGTMIPTPGMSHIPNSSMVVASSIDTSIISASGCSSIGSTSFNSVNMLPAGGMLGSSLNRSDGLSNGYQQSSTNFSVSSGGNMSSMGVQRIASQMIPTPGFTVSSNHSHMNIDSSTNGSAFSSVESTMVSQSQLQQQKQNVGGQSHVLQNLSSQVSSGMRSGLLQKPFANSNGSINSGVGLIGNNIQLANELGTSDGDGYGLNNVDSFPSGNFYASATSSRSMMNTQNTNSVKLPSIPKTSSLISGHSNLHGMQQTAHMKSQAINQLEKLNFQSSLTSRDTLLHSQQQYQQRPQQFQQPEQYVQQQFQLKLQSQQPQHLVNSDTFSQSQLSSNLETQVKSEHGIEHHKDVLNSHVSEQFHMSEMQSQYQQNSSEECSRSAQYLSFPSGQHDLISTTTHNSQQMLHPHQVVAESQNNFSCLNVGAQSKSVGLNQWPQAQDGNQIPDNISHDQHLHMDFHQRISGQDEAQCNNLSSDVSVVGHAVASRGSEVKAEVPTHLVHGKLSEMKMDNDNADDKMSDGEPVKYDKPANLARQENIKTEKEVGQDRQENVMQPSENAAGTKSGKPKIKGVSLTELFTPEQVREHITGLRQWVGQSKSKAEKNQAMEHTMSENSCQLCAVEKLTFEPPPIYCTTCGVRIKRNNMYYTMGTGDTRHYFCIPCYNDARTENIIVDGTPIAKSRLEKKKNDEETEEWWVQCDKCEAWQHQICALFNGRRNDGGQAEYTCPNCYIEEVERGERLPLPQSAVLGAKDLPRTILSDHIEQRLFRRLKQERQERARLQGKTYDEVPGAECLVIRVVSSVDKKLEVKQRFLEIFHEENYPTEFPYKSKVVLLFQKIEGVEVCLFGMYVQEFGSECQFPNQRRVYLSYLDSVKYFRPEIKTVTGEALRTFVYHEILIGYLEYCKKRGFTSCYIWACPPLKGEDYILYCHPEIQKTPKSDKLREWYLSMLRKAAKESIVVDITNLYDHFFISTGECRAKVTAARLPYFDGDYWPGAAEDLIYQLRQEEDGRKQNKKGTTKKTITKRALKASGQSDLSGNASKDLLLMHKLGETISPMKEDFIMVHLQHACTHCCILLVSGNRWVCNQCKNFQICDK. 1238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11967 1237 ProSitePatterns Zinc finger PHD-type signature. 799 870 IPR019786 -
Seca3g11967 1237 SMART KAT11_2 921 1218 IPR013178 GO:0004402|GO:0006355|GO:0016573
Seca3g11967 1237 MobiDBLite consensus disorder prediction 649 688 - -
Seca3g11967 1237 MobiDBLite consensus disorder prediction 1 20 - -
Seca3g11967 1237 SUPERFAMILY FYVE/PHD zinc finger 832 872 IPR011011 -
Seca3g11967 1237 SUPERFAMILY RING/U-box 1186 1236 - -
Seca3g11967 1237 MobiDBLite consensus disorder prediction 649 708 - -
Seca3g11967 1237 Pfam Histone acetylation protein 928 1146 IPR013178 GO:0004402|GO:0006355|GO:0016573
Seca3g11967 1237 PANTHER CBP/P300-RELATED 85 1209 IPR013178 GO:0004402|GO:0006355|GO:0016573
Seca3g11967 1237 CDD PHD_HAC_like 798 870 - -
Seca3g11967 1237 ProSiteProfiles CBP/p300-type histone acetyltransferase (HAT) domain profile. 888 1237 IPR031162 GO:0004402
Seca3g11967 1237 MobiDBLite consensus disorder prediction 459 482 - -
Seca3g11967 1237 MobiDBLite consensus disorder prediction 245 286 - -
Seca3g11967 1237 Coils Coil 904 924 - -
Seca3g11967 1237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 823 871 IPR013083 -
Seca3g11967 1237 MobiDBLite consensus disorder prediction 459 479 - -
Seca3g11967 1237 ProSiteProfiles Zinc finger ZZ-type profile. 1206 1237 IPR000433 GO:0008270
Seca3g11967 1237 Pfam PHD-finger 829 871 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11967 Seca-Chr3 268099801 268115711 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca3g11967 HAT_KAT11 8.8e-32 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11967 K04498 - han:110941377 1199.11