Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11966 ATGGTTGAAATTACTGATGTACCATCTGATACAAAGGACAAAGATGATATTCTTGAGAGTGAATTCTTTGACACTAGACAGGCATTTTTGAGTCTCTGCCAGGGAAATCATTACCAGTATGATACACTAAGGCGGGCCAAGCATTCCTCAATGATGGTTCTCTATCATCTTCATAATCCAACCGCTCCTGCATTTGTGACAACTTGTAATAAATGCTATCTTGACATAGAAACTGGTCAAGGTTGGCGTTGTGAGGTTTGCCCTGAGTATGATGTATGCAATGCTTGTTATCAAAAGGACGGAGGTGTTGATCATCCTCATAAGTTGACAAATCATCCATCATTGGTGGATCGTGATGCTCAAAATAAAGAAGCAAGGCAGCTTCGAGTATTGCAGCTACGTAAAATGCTTGATCTCCTTGTGCATGCATCCCAATGTCGTTCTGCGCATTGCCAATATCCAAATTGTCGCAAGGTCAAGGGGCTTTTTCGCCATGGGATGCACTGCAAAACACGTGCATCTGGAGGTTGTGTTCTGTGCAAGAAAATGTGGTATTTGCTTCAACTTCATGCTCGTGCTTGCAAAGAATCTGAATGCCACGTACCACGATGCAGAGATTTGAAAGAACATTTAAGGAGGTTGCAGCAACAGTCTGATTCACGGCGTAGAGCTGCTGTAATGGAAATGATGAGGCAGAGAGCTGCAGAAGTTGCCAACAATGCTGGATGA 729 0.4321 MVEITDVPSDTKDKDDILESEFFDTRQAFLSLCQGNHYQYDTLRRAKHSSMMVLYHLHNPTAPAFVTTCNKCYLDIETGQGWRCEVCPEYDVCNACYQKDGGVDHPHKLTNHPSLVDRDAQNKEARQLRVLQLRKMLDLLVHASQCRSAHCQYPNCRKVKGLFRHGMHCKTRASGGCVLCKKMWYLLQLHARACKESECHVPRCRDLKEHLRRLQQQSDSRRRAAVMEMMRQRAAEVANNAG. 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11966 242 PANTHER CBP/P300-RELATED 9 233 IPR013178 GO:0004402|GO:0006355|GO:0016573
Seca3g11966 242 ProSitePatterns Zinc finger ZZ-type signature. 69 96 IPR000433 GO:0008270
Seca3g11966 242 Gene3D TAZ domain 121 238 IPR035898 -
Seca3g11966 242 Gene3D - 62 117 IPR043145 -
Seca3g11966 242 Pfam TAZ zinc finger 134 204 IPR000197 -
Seca3g11966 242 ProSiteProfiles CBP/p300-type histone acetyltransferase (HAT) domain profile. 1 62 IPR031162 GO:0004402
Seca3g11966 242 SMART TAZ_2 127 205 IPR000197 -
Seca3g11966 242 FunFam Histone acetyltransferase HAC1-like protein 121 238 - -
Seca3g11966 242 SUPERFAMILY TAZ domain 126 209 IPR035898 -
Seca3g11966 242 SUPERFAMILY RING/U-box 45 113 - -
Seca3g11966 242 ProSiteProfiles Zinc finger ZZ-type profile. 64 117 IPR000433 GO:0008270
Seca3g11966 242 SMART zz_5 63 109 IPR000433 GO:0008270
Seca3g11966 242 ProSiteProfiles Zinc finger TAZ-type profile. 124 207 IPR000197 -
Seca3g11966 242 Pfam Zinc finger, ZZ type 66 108 IPR000433 GO:0008270
Seca3g11966 242 FunFam Histone acetyltransferase HAC1 63 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11966 Seca-Chr3 268093635 268099106 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Seca3g11966 zf-TAZ 3.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11966 K04498 - gmx:100809207 496.893