Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11965 ATGTGTGGAGGTGCTATTATCTCCGACTTCATCCCGACGGCGACCAGTGGTTCCCGGCGTGTGACCGCCGACATCCTGTGGCCGAACTTGAGGAAACCCAGTTCGAGGAAACAGTTGTCTAAGCCACTGTTGTTGGACGATGACTTCGAGGCTGGTTTCAGAGAATTCAAGGATGATTCTGACTTCGAGGAAGACGAGGAGGACTATGATGACATGATGGTCGGTGCTAAGGGATTTGCCTTTGGTCCCTCCAAGACCAAGCCTTCCAAGTCCCTCTCTCGTGAATCATCTGCTGCAAAATCCGTGGAATTTGATGACCAAGCTGAGAAGTCTGCTAAGAGAGAGAGGAAGAATCAGTATAGGGGGATCCGCCAACGTCCATGGGGAAAGTGGGCAGCTGAGATCCGTGACCCAAGAAAGGGGGTTCGTGTTTGGCTTGGAACTTTTAACACTGCTGAAGAAGCTGCAAGAGCTTATGATGCTGAAGCTAGGAGGATTCGTGGCAAGAAAGCCAAGGTGAACTTCCCTGATGGTGCTCCAGGTTCTTCCTCAAAACGTGCCAAGGCAAATCCACAGGAGCAGGTGTTGAAGGGAAATCTGAACTCTGTTATGCCCAAAGTGAACAAGATGTTTAATTTTGGTGACAATCCGGAGGACTACTACTCCACTATGGATCAGATGGAACAGAAACCACAGGTTAACCACCAGTATGCTAACATGGGGCCCTTCCCTGGAAATAGAGCTCAGTACTCACCCCTTACCGCATCTGCTGATGTTACTGCTTATTTCAGTTCAGACCATTCAAGCAATTCATTTGATTATTCTGATCTGGGATGGTGTGAACAGGGCCAAAAGACTCCTGAGATCTCATCCATGCTTTCTACTCCTCTGGAATGTGAATCTCAGTTTGTGCAGGGTGCTAATCAGCAGAATAACCTGCAGTCTGACTCTCAGGATGTGCTACCCATACAAGATGAATCTGCAAAGACACTATCTGGGGAGCTTGCAGATATTGAATTCCAGCTGAAGTTATTTGAGACCCCTTATCTCGATGGGAGCTGGGATGATGCTTCATTGGCATCCTTGCTCAACGGAGATGCGACTCAGGATGGTGGAAACCCAATGAACCTTTGGAGCTTTGATGACCTGCCTTCCATTGCAGGCGGAGTTTTCTGA 1176 0.4855 MCGGAIISDFIPTATSGSRRVTADILWPNLRKPSSRKQLSKPLLLDDDFEAGFREFKDDSDFEEDEEDYDDMMVGAKGFAFGPSKTKPSKSLSRESSAAKSVEFDDQAEKSAKRERKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPDGAPGSSSKRAKANPQEQVLKGNLNSVMPKVNKMFNFGDNPEDYYSTMDQMEQKPQVNHQYANMGPFPGNRAQYSPLTASADVTAYFSSDHSSNSFDYSDLGWCEQGQKTPEISSMLSTPLECESQFVQGANQQNNLQSDSQDVLPIQDESAKTLSGELADIEFQLKLFETPYLDGSWDDASLASLLNGDATQDGGNPMNLWSFDDLPSIAGGVF. 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11965 391 MobiDBLite consensus disorder prediction 84 123 - -
Seca3g11965 391 MobiDBLite consensus disorder prediction 172 191 - -
Seca3g11965 391 SMART rav1_2 119 182 IPR001471 GO:0003700|GO:0006355
Seca3g11965 391 ProSiteProfiles AP2/ERF domain profile. 119 176 IPR001471 GO:0003700|GO:0006355
Seca3g11965 391 SUPERFAMILY DNA-binding domain 119 177 IPR016177 GO:0003677
Seca3g11965 391 Gene3D AP2/ERF domain 118 177 IPR036955 GO:0003700|GO:0006355
Seca3g11965 391 PANTHER DNA-BINDING DOMAIN 94 265 IPR044808 GO:0003700|GO:0009873
Seca3g11965 391 Pfam AP2 domain 119 168 IPR001471 GO:0003700|GO:0006355
Seca3g11965 391 MobiDBLite consensus disorder prediction 99 122 - -
Seca3g11965 391 CDD AP2 119 177 IPR001471 GO:0003700|GO:0006355
Seca3g11965 391 FunFam Ethylene-responsive transcription factor 2 118 177 - -
Seca3g11965 391 PRINTS Ethylene responsive element binding protein signature 120 131 IPR001471 GO:0003700|GO:0006355
Seca3g11965 391 PRINTS Ethylene responsive element binding protein signature 142 158 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11965 Seca-Chr3 268084920 268089564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11965 1 391 AP2-EREBP Transcription Factor Family AT1G53910 44.828 7.27e-68 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca3g11965 AP2 2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11965 K09286 - gmx:100818646 471.47