Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11958 ATGATGATGAGTGCATTCAACTTCTATGGTGGTTGGGGCATTCTTGTGGCTGTTGTTCTGCTTCTTATATTATTTCTTTGGCAGCGTAAGAGATTTTTCTTCGCCTCATCTCCATCCACCACCTTTTTGGTCTCCGATTCTATCAATTCAAACTTGAGAACCTCAAAAAATGTGTCAGACGCAGATTTGAAGTTTTTAATGGAGATTTTGGATGAGAAGCTCAACGAGAGTGATAAATGGGAAGATGTTATAAATAAAAGAAACCATAATCTGTGCTACAATGCGAAATGCTGCAAGCCTAAGAATGGTCCCCTGAGATATTTGAGCATAACTGTGTTCAATGATATTTCGTCTGAGATGCTAAGAAACTTCTACATGGACAATGATTACAGAAAACAGTGGGATAAGACACTAGCTGAGCATAATCAACTGCAGGTGCAGGAGTCTGATGGTGCTGAAGTTGGTCGTACAGTTAAAAAGTTTCCTCTTTTGAGACCTAGAGAATATGTTCTAACTTGGAAATTGTGGGAGGGGAGGGATAAAACTTTTTACTGTTTTATGAAGGAATGTGAGCATCCTTTGGCACCACGCCAGAAAAAGTATGTACGAGTTGAGTTTTTCAGATCTGGCTGGCGAATAAGAGAAGTACCAGGTAGAAATGCCTGTGAGATCACAATGTTTCATCAAGAAGATGCTGGTTTGAATATGGAGATGGCAAAGCTGGCTTTTTCTAAAGGTATATGGAATTACGTGTGCAAGATGGATAATGCACTCAGGAGATACTCTATTATAAGCTCTCGTTTATCAAGTTCAGTTACCACTTCGGTCAATTTATTGCAGAAGGTACCGGCTAGCTTGGACCCTAGTACGGGCAACATATCTCCGGCACATCTTACTATCCGCCGTGATCAAGTTTCTGATGAATCTCAAATGCACATGATCTCAAGAAGGCCATCAAGAAAGTTGTTGACCAATAGTTTGCTGCTGCTTGGGGGTGCAATATGTCTGTCCCGTGGTCACTCTAGCCTAGGTGCTAAAGTTGCCATGGCATACATTTTAACGAAACTTATTTCAGCCCTTAATGTGATGTATACCAGCTTAAATTCGCCTTCACGACTGAGTGGCTGGAAATCAAGCGGAGGTGATCCTTGTGGCGACTCTTGGGAAGGAATCAAATGCTCAGGCTCCTCTGTCACAGAAATAAATTTGTCTGACATGGGACTTACTGGATCAATGGGGTACCAATTGTCGAGCTTAACATCTGTTACCTACTTTGACTTGAGCAACAACAACCTCAAGGGTGATATACCGTATCAACTTCCTCCAAATGCCCATTACATAAATCTTGCACATAATCGGCTCAATAACCAGTTGGGCGATATGTTTGGGAAACTCACTAAACTAAAACAGCTGGATGTGTCATTCAATTCACTGTCAGGAAACCTACCTCGGAGTTTTAAATCACTCACAAGCCTCAAGAAGTTGCGTCTGGAAAACAATCATTTTTCCGGTTCAGTAAATGTCCTTGCCAACCTTCCACTTGATGATTTGAATATTGAAAATAACAAATTTACTGGTTGGTTCCCTGAGGAGTTAAAGGATATAAATAGCTTGCAAACTGGAGGAAACTCTTGGTCAACTGCACCGGCGCCACCTCCTCCTCCTGGTACACCTCCTGTCAAGCATTCCGTGAAAAAGAGTGAAAAATCTGTTCTTAGTGGAGTAGCTATAGCAGGCATAGTTTTTGGTGTGCTGGTAGTAATTGTAACCATTGTTGCTTTTTCTAAAAGAAGAAGGTCATCTTTACCTTCTTCACATTTTATTGATGAAGAAAGGCACAGCCAGCACAGATCTTTTACTCCCCTTGCATCTCAGGAGTTATCCAAAGATTTGGGTGCTGATGCCAGCAAAGAATACAAAGGATTTGAGTCATTGGATTCCACTTCAATTGACATAAAGGCCTTGCAGAAAACTCCATCAATTAGTGTTAGGTCCTCAGTCTCTGATTGTGTGCAATCCTTTAATGACAATGAGTTTGCAAATCGTCTAAATGCTAGAAGAAGCACATCAATCCGTTGTACTCCCTTTTCATTGGCAGAGTTGCAGACTGGTACTGCTAATTTTGCCTCAGGTCGACTTCTTGGTGAAGGATCTATTGGATGTGTTTATCGAGCCAAATATGCTGAAGGAAAGGTGTTGGCTGTAAAAAAAATCAACGCTTCACTTTTTAATGGTGGTCGTCCTGAGGAATTCTCTCAGATTGTTTCAAACATATGCAAACTTCGTCATCCAAATATTGCTGAGCTTGTTGGTTATTGTTCAGAGCAGGACCACATGTTAATATATGATTATTTCAGAAATGGCTCTCTCCACGACTTTTTACACTTATCAGATGACTTCAGCAAACCACTAACTTGGAACACCAGAGTCAGAATTGCATTGGGAACTGCTCGGGCTGTTGAGTACCTACATGAAATTTGTTCTCCGCCTTTAGTTCACAAGAATATCAAGTCCTCCAATATCTTGCTTGACATGGATCTAAATCCCCGTCTCTCAGACTATGGTTTGGCATCCTTCCACCAGCGTACTAGCCAAAATCTTGGGGCAGGATATAATGCGCCAGAATGCACAAAACCATCAGCCTATACCATGAAGAGTGATGTATACAGTTTTGGGGTAGTCATGCTGGAACTTTTGACGGGTCGAATGCCTTTAGACAGTTCAAAGCCAAAACCAGAACAGTGTCTCGTTCGTTGGGCTACCCCACAGCTTCATGACATTAATGCGGTGGAAAAAATGGTGGACCCTGCCTTGCGGGGACTTTACCCTCCTAAATCACTCTTCCGATTTGCTGACATCATTGCCCTTTGTGTTCAGGCTGAGCCCGAATTTCGGCCACCTGTGTCAGAGGTGGTTCAGGCATTGGTGCGATTAGTTCAACGGTCGAGTATGAAAATGAGAGATGATCTTGGAGCCTTTGGTCGGATGGATGATTATGATGACTGA 3006 0.4212 MMMSAFNFYGGWGILVAVVLLLILFLWQRKRFFFASSPSTTFLVSDSINSNLRTSKNVSDADLKFLMEILDEKLNESDKWEDVINKRNHNLCYNAKCCKPKNGPLRYLSITVFNDISSEMLRNFYMDNDYRKQWDKTLAEHNQLQVQESDGAEVGRTVKKFPLLRPREYVLTWKLWEGRDKTFYCFMKECEHPLAPRQKKYVRVEFFRSGWRIREVPGRNACEITMFHQEDAGLNMEMAKLAFSKGIWNYVCKMDNALRRYSIISSRLSSSVTTSVNLLQKVPASLDPSTGNISPAHLTIRRDQVSDESQMHMISRRPSRKLLTNSLLLLGGAICLSRGHSSLGAKVAMAYILTKLISALNVMYTSLNSPSRLSGWKSSGGDPCGDSWEGIKCSGSSVTEINLSDMGLTGSMGYQLSSLTSVTYFDLSNNNLKGDIPYQLPPNAHYINLAHNRLNNQLGDMFGKLTKLKQLDVSFNSLSGNLPRSFKSLTSLKKLRLENNHFSGSVNVLANLPLDDLNIENNKFTGWFPEELKDINSLQTGGNSWSTAPAPPPPPGTPPVKHSVKKSEKSVLSGVAIAGIVFGVLVVIVTIVAFSKRRRSSLPSSHFIDEERHSQHRSFTPLASQELSKDLGADASKEYKGFESLDSTSIDIKALQKTPSISVRSSVSDCVQSFNDNEFANRLNARRSTSIRCTPFSLAELQTGTANFASGRLLGEGSIGCVYRAKYAEGKVLAVKKINASLFNGGRPEEFSQIVSNICKLRHPNIAELVGYCSEQDHMLIYDYFRNGSLHDFLHLSDDFSKPLTWNTRVRIALGTARAVEYLHEICSPPLVHKNIKSSNILLDMDLNPRLSDYGLASFHQRTSQNLGAGYNAPECTKPSAYTMKSDVYSFGVVMLELLTGRMPLDSSKPKPEQCLVRWATPQLHDINAVEKMVDPALRGLYPPKSLFRFADIIALCVQAEPEFRPPVSEVVQALVRLVQRSSMKMRDDLGAFGRMDDYDD. 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11958 1001 Pfam Leucine rich repeat N-terminal domain 358 394 IPR013210 -
Seca3g11958 1001 SUPERFAMILY L domain-like 374 539 - -
Seca3g11958 1001 Gene3D Transferase(Phosphotransferase) domain 1 785 994 - -
Seca3g11958 1001 Pfam START domain 67 231 IPR002913 GO:0008289
Seca3g11958 1001 Pfam Protein tyrosine and serine/threonine kinase 711 975 IPR001245 GO:0004672|GO:0006468
Seca3g11958 1001 Gene3D - 53 262 IPR023393 -
Seca3g11958 1001 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 785 989 - -
Seca3g11958 1001 ProSiteProfiles Protein kinase domain profile. 708 978 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11958 1001 CDD START_STARD2_7-like 58 261 - -
Seca3g11958 1001 Gene3D Phosphorylase Kinase; domain 1 667 784 - -
Seca3g11958 1001 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 350 979 IPR046959 -
Seca3g11958 1001 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 673 784 - -
Seca3g11958 1001 SUPERFAMILY Bet v1-like 68 261 - -
Seca3g11958 1001 SUPERFAMILY Protein kinase-like (PK-like) 688 975 IPR011009 -
Seca3g11958 1001 FunFam StAR-related lipid transfer protein 7, mitochondrial 53 263 - -
Seca3g11958 1001 Gene3D Ribonuclease Inhibitor 357 556 IPR032675 -
Seca3g11958 1001 ProSiteProfiles START domain profile. 66 263 IPR002913 GO:0008289
Seca3g11958 1001 MobiDBLite consensus disorder prediction 539 565 - -
Seca3g11958 1001 Pfam Leucine rich repeat 443 502 IPR001611 GO:0005515
Seca3g11958 1001 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 443 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11958 Seca-Chr3 267933637 267955771 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11958 357 1000 Strubbelig Receptor Gene Family AT1G78980 61.743 0.0 822
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Seca3g11958 PK_Tyr_Ser-Thr 1.3e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11958 - - psat:127107173 1031.55