Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11957 ATGTTTGTCACCAATAGTTCTGTTATCTGGTCATGCAGAGATCTTTCTAAGAATGGCTTCACTGGAGATGTACCTTACTCCATTTCTCAGATGAGTGACCTCAACCACCTAAATCTTGCACATAATCGGCTCAATAACCAGTTGGGCGATATGTTTGGGAAACTCACTAAACTAAAACAGCTGGATGTGTCATTCAATTCACTGTCAGGAAACCTACCTCGGAGTTTTAAATCACTCACAAGCCTCAAGAAGTTGCGTCTGGAAAACAATCATTTTTCCGGTTCAGTAAATGTCCTTGCCAACCTTCCACTTGATGATTTGAATATTGAAAATAACAAATTTACTGGTTGGTTCCCTGAGGAGTTAAAGGATATAAATAGCTTGCAAACTGGAGGAAACTCTTGGTCAACTGCACCGGCGCCACCTCCTCCTCCTGGTACACCTCCTGTCAAGCATTCCGTGAAAAAGAGTGAAAAATCTGTTCTTAGTGGAGTAGCTATAGCAGGCATAGTTTTTGGTGTGCTGGTAGTAATTGTAACCATTGTTGCTTTTTCTAAAAGAAGAAGGTCATCTTTACCTTCTTCACATTTTATTGATGAAGAAAGGCACAGCCAGCACAGATCTTTTACTCCCCTTGCATCTCAGGAGTTATCCAAAGATTTGGGTGCTGATGCCAGCAAAGAATACAAAGGATTTGAGTCATTGGATTCCACTTCAATTGACATAAAGGCCTTGCAGAAAACTCCATCAATTAGTGTTAGGTCCTCAGTCTCTGATTGTGTGCAATCCTTTAATGACAATGAGTTTGCAAATCGTCTAAATGCTAGAAGAAGCACATCAATCCGTTGTACTCCCTTTTCATTGGCAGAGTTGCAGACTGGTACTGCTAATTTTGCCTCAGGTCGACTTCTTGGTGAAGGATCTATTGGATGTGTTTATCGAGCCAAATATGCTGAAGGAAAGGTGTTGGCTGTAAAAAAAATCAACGCTTCACTTTTTAATGGTGGTCGTCCTGAGGAATTCTCTCAGATTGTTTCAAACATATGCAAACTTCGTCATCCAAATATTGCTGAGCTTGTTGGTTATTGTTCAGAGCAGGACCACATGTTAATATATGATTATTTCAGAAATGGCTCTCTCCACGACTTTTTACACTTATCAGATGACTTCAGCAAACCACTAACTTGGAACACCAGAGTCAGAATTGCATTGGGAACTGCTCGGGCTGTTGAGTACCTACATGAAATTTGTTCTCCGCCTTTAGTTCACAAGAATATCAAGTCCTCCAATATCTTGCTTGACATGGATCTAAATCCCCGTCTCTCAGACTATGGTTTGGCATCCTTCCACCAGCGTACTAGCCAAAATCTTGGGGCAGGATATAATGCGCCAGAATGCACAAAACCATCAGCCTATACCATGAAGAGTGATGTATACAGTTTTGGGGTAGTCATGCTGGAACTTTTGACGGGTCGAATGCCTTTAGACAGTTCAAAGCCAAAACCAGAACAGTGTCTCGTTCGTTGGGCTACCCCACAGCTTCATGACATTAATGCGGTGGAAAAAATGGTGGACCCTGCCTTGCGGGGACTTTACCCTCCTAAATCACTCTTCCGATTTGCTGACATCATTGCCCTTTGTGTTCAGGCTGAGCCCGAATTTCGGCCACCTGTGTCAGAGGTGGTTCAGGCATTGGTGCGATTAGTTCAACGGTCGAGTATGAAAATGAGAGATGATCTTGGAGCCTTTGGTCGGATGGATGATTATGATGACTGA 1776 0.4251 MFVTNSSVIWSCRDLSKNGFTGDVPYSISQMSDLNHLNLAHNRLNNQLGDMFGKLTKLKQLDVSFNSLSGNLPRSFKSLTSLKKLRLENNHFSGSVNVLANLPLDDLNIENNKFTGWFPEELKDINSLQTGGNSWSTAPAPPPPPGTPPVKHSVKKSEKSVLSGVAIAGIVFGVLVVIVTIVAFSKRRRSSLPSSHFIDEERHSQHRSFTPLASQELSKDLGADASKEYKGFESLDSTSIDIKALQKTPSISVRSSVSDCVQSFNDNEFANRLNARRSTSIRCTPFSLAELQTGTANFASGRLLGEGSIGCVYRAKYAEGKVLAVKKINASLFNGGRPEEFSQIVSNICKLRHPNIAELVGYCSEQDHMLIYDYFRNGSLHDFLHLSDDFSKPLTWNTRVRIALGTARAVEYLHEICSPPLVHKNIKSSNILLDMDLNPRLSDYGLASFHQRTSQNLGAGYNAPECTKPSAYTMKSDVYSFGVVMLELLTGRMPLDSSKPKPEQCLVRWATPQLHDINAVEKMVDPALRGLYPPKSLFRFADIIALCVQAEPEFRPPVSEVVQALVRLVQRSSMKMRDDLGAFGRMDDYDD. 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11957 591 Pfam Protein tyrosine and serine/threonine kinase 301 565 IPR001245 GO:0004672|GO:0006468
Seca3g11957 591 SUPERFAMILY L domain-like 14 129 - -
Seca3g11957 591 ProSiteProfiles Protein kinase domain profile. 298 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11957 591 CDD TM_EGFR-like 163 192 - -
Seca3g11957 591 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 375 579 - -
Seca3g11957 591 Pfam Leucine rich repeat 34 92 IPR001611 GO:0005515
Seca3g11957 591 Gene3D Phosphorylase Kinase; domain 1 257 374 - -
Seca3g11957 591 FunFam Leucine-rich repeat receptor protein kinase EMS1 10 99 - -
Seca3g11957 591 MobiDBLite consensus disorder prediction 129 155 - -
Seca3g11957 591 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 263 374 - -
Seca3g11957 591 PANTHER LEUCINE RICH REPEAT KINASE 2 14 572 - -
Seca3g11957 591 Gene3D Ribonuclease Inhibitor 11 152 IPR032675 -
Seca3g11957 591 SUPERFAMILY Protein kinase-like (PK-like) 278 565 IPR011009 -
Seca3g11957 591 Gene3D Transferase(Phosphotransferase) domain 1 375 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11957 Seca-Chr3 267927452 267932877 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11957 14 590 Strubbelig Receptor Gene Family AT1G78980 62.287 0.0 726
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Seca3g11957 PK_Tyr_Ser-Thr 4.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11957 - - psat:127107173 929.472