Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11956 ATGTTTGTCACCAATAGTTCTGTTATCTGGTCATGCAGAGATCTTTCTAAGAATGGCTTCACTGGAGATGTACCTTACTCCATTTCTCAGATGAGTGACCTCAACCACCTAAATCTTGCACATAATCGGCTCAATAACCAGTTGGGCGATATGTTTGGGAAACTCACTAAACTAAAACAGCTGGATGTGTCATTCAATTCACTGTCAGGAAACCTACCTCGGAGTTTTAAATCACTCACAAGCCTCAAGAAGTTGCGTCTGGAAAACAATCATTTTTCCGGTTCAGTAAATGTCCTTGCCAACCTTCCACTTGATGATTTGAATATTGAAAATAACAAATTTACTGGTTGGTTCCCTGAGGAGTTAAAGGATATAAATAGCTTGCAAACTGGAGGAAACTCTTGGTCAACTGCACCGGCGCCACCTCCTCCTCCTGGTACACCTCCTGTCAAGCATTCCGTGAAAAAGAGTGAAAAATCTGTTCTTAGTGGAGTAGCTATAGCAGGCATAGTTTTTGGTGTGCTGGTAGTAATTGTAACCATTGTTGCTTTTTCTAAAAGAAGAAGGTCATCTTTACCTTCTTCACATTTTATTGATGAAGAAAGGCACAGCCAGCACAGATCTTTTACTCCCCTTGCATCTCAGGAGTTATCCAAAGATTTGGGTGCTGATGCCAGCAAAGAATACAAAGGATTTGAGTCATTGGATTCCACTTCAATTGACATAAAGGCCTTGCAGAAAACTCCATCAATTAGTGTTAGGTCCTCAGTCTCTGATTGTGTGCAATCCTTTAATGACAATGAGTTTGCAAATCGTCTAAATGCTAGAAGAAGCACATCAATCCGTTGTACTCCCTTTTCATTGGCAGAGTTGCAGACTGGTACTGCTAATTTTGCCTCAGGTCGACTTCTTGGTGAAGGATCTATTGGATGTGTTTATCGAGCCAAATATGCTGAAGGAAAGGTGTTGGCTGTAAAAAAAATCAACGCTTCACTTTTTAATGGTGGTCGTCCTGAGGAATTCTCTCAGATTGTTTCAAACATATGCAAACTTCGTCATCCAAATATTGCTGAGCTTGTTGGTTATTGTTCAGAGCAGGACCACATGTTAATATATGATTATTTCAGAAATGGCTCTCTCCACGACTTTTTACACTTATCAGATGACTTCAGCAAACCACTAACTTGGAACACCAGAGTCAGAATTGCATTGGGAACTGCTCGGGCTGTTGAGTTAGTCTATGTTTAG 1248 0.4062 MFVTNSSVIWSCRDLSKNGFTGDVPYSISQMSDLNHLNLAHNRLNNQLGDMFGKLTKLKQLDVSFNSLSGNLPRSFKSLTSLKKLRLENNHFSGSVNVLANLPLDDLNIENNKFTGWFPEELKDINSLQTGGNSWSTAPAPPPPPGTPPVKHSVKKSEKSVLSGVAIAGIVFGVLVVIVTIVAFSKRRRSSLPSSHFIDEERHSQHRSFTPLASQELSKDLGADASKEYKGFESLDSTSIDIKALQKTPSISVRSSVSDCVQSFNDNEFANRLNARRSTSIRCTPFSLAELQTGTANFASGRLLGEGSIGCVYRAKYAEGKVLAVKKINASLFNGGRPEEFSQIVSNICKLRHPNIAELVGYCSEQDHMLIYDYFRNGSLHDFLHLSDDFSKPLTWNTRVRIALGTARAVELVYV. 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11956 415 Gene3D Transferase(Phosphotransferase) domain 1 278 413 - -
Seca3g11956 415 SUPERFAMILY L domain-like 14 129 - -
Seca3g11956 415 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 14 411 IPR046959 -
Seca3g11956 415 Gene3D Ribonuclease Inhibitor 10 159 IPR032675 -
Seca3g11956 415 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 263 374 - -
Seca3g11956 415 SUPERFAMILY Protein kinase-like (PK-like) 284 411 IPR011009 -
Seca3g11956 415 CDD TM_EGFR-like 163 192 - -
Seca3g11956 415 MobiDBLite consensus disorder prediction 129 155 - -
Seca3g11956 415 FunFam Leucine-rich repeat receptor protein kinase EMS1 10 99 - -
Seca3g11956 415 ProSiteProfiles Protein kinase domain profile. 298 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11956 415 Pfam Protein tyrosine and serine/threonine kinase 301 411 IPR001245 GO:0004672|GO:0006468
Seca3g11956 415 Pfam Leucine rich repeat 34 92 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11956 Seca-Chr3 267923140 267926692 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11956 14 414 Strubbelig Receptor Gene Family AT1G78980 55.257 2.27e-148 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Seca3g11956 PK_Tyr_Ser-Thr 4.7e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11956 - - gmx:100785529 604.749