Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11955 ATGAAGAGTGATGTATACAGTTTTGGGGTAGTCATGCTGGAACTTTTGACGGGTCGAATGCCTTTAGACAGTTCAAAGCCAAAACCAGAACAGTGTCTCGTTCGTTGGGCTACCCCACAGCTTCATGACATTAATGCGGTGGAAAAAATGGTGGACCCTGCCTTGCGGGGACTTTACCCTCCTAAATCACTCTTCCGATTTGCTGACATCATTGCCCTTTGTGTTCAGGCTGAGCCCGAATTTCGGCCACCTGTGTCAGAGGTGGTTCAGGCATTGGTGCGATTAGTTCAACGGTCGAGTATGAAAATGAGAGATGATCTTGGAGCCTTTGGTCGGATGGATGATTATGATGACTGA 357 0.4762 MKSDVYSFGVVMLELLTGRMPLDSSKPKPEQCLVRWATPQLHDINAVEKMVDPALRGLYPPKSLFRFADIIALCVQAEPEFRPPVSEVVQALVRLVQRSSMKMRDDLGAFGRMDDYDD. 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11955 118 ProSiteProfiles Protein kinase domain profile. 1 95 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11955 118 Pfam Protein tyrosine and serine/threonine kinase 2 92 IPR001245 GO:0004672|GO:0006468
Seca3g11955 118 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 97 - -
Seca3g11955 118 SUPERFAMILY Protein kinase-like (PK-like) 2 92 IPR011009 -
Seca3g11955 118 Gene3D Transferase(Phosphotransferase) domain 1 1 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11955 Seca-Chr3 267921267 267921979 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11955 2 117 Strubbelig Receptor Gene Family AT1G78980 76.923 4.10e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Seca3g11955 PK_Tyr_Ser-Thr 2.8e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11955 - - lja:Lj3g3v2027320.2 225.328