Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11952 ATGAGCTTCAAAGACCCCATCAGACCATACAGGCAGGATGAATCCTTAAGGTCACAATTTGGCAGAAGAATAGGCATGAGTGCAAGGTCATGCATGGACTTCGCAGAATCTGAGTCAGACATATCATTTGTAAGCTCGAGGCCCAGCAGTGGGCGTTCATCCTCCGTTTTCTTTGACCATATTGACTCTGGTCGAAACTCACGAATTTCAACCAGTTCAGAGCGTAGCTTGGGATCAACCCGAATGGGACTCAAGTTCACTACCCCAAGTTCACCAGATAATAATTCCTTCTCACAGGACAAGGACAAGGACAGCAGCAGAATATCATTTTCTTATTCGGTTGACAACATGCCCAATATAACACTAAACATTCAGGATGAAGCAGAAACTGATATGAAGAGGTTGAAGCTTGAGTTGAAGCAAACAATGGAGATGTACAGTGCAGCATGCAGAGAAGCAATAACAGCACAACACAAGTTAATGGAAATGAACAACCAGAGAATCGAGGAAGAAAAAAAACTAGATGAGGCACGATTGTCCCAGGAAGCAGCATTGGCAATTGCAGAGAAAGAGAAAGCAAGAAGTAAAGCAGCGATGGAAACAGCTGAAGCAGCTAAGAAAATTGCAAGGGTAGAATCCAATAGAGGTGAAAGTATTGAGTCAAAAGCTGTTAAAGAAGCAAAGGAAATGAGGAAACTATTGGATAATCTCGCCCAAACGGATGAAAGTTATAGGAGATACACAATTGAGGAGATTGAAACAGCTACAGACTTCTTTTCTGAATCTCGGAAGATTGGAGAAGGGGGCTATGGCCCTGTCTATAAATGTTACATTGATCACACTCCAGTGGCTGTCAAGGTCCTGCGTGCGGATTCTGCTCAAGGGAAGTCACAGTTTCAGCAAGAGGTTAACATACTTGGGTGCATACGCCATCCCAACATGGTGCTTCTTCTAGGAGCCTGTCCAGAGCACGGGATACTGATCTATGAATATATGGCTAATGGAAGCTTAGAAGATTGCCTCTTTCGAAAGAAGAAGAGTGGACTTGTGTCTTGGCAGGTCAGGTTTCGAATAGCTGCAGAGATAGCCACTGGCTTACTATTCCTCCATCAGACAAAGCCAGAACCGCTGGTGCACCGTGATCTGAAACCAGGAAACATTTTACTAGACCACAATTATGTAAGCAAGATTAGCGATGTTGGATTGGCCAGACTTCTCCCTGCTGTAGCTGAAAATATAACACAGTACCGCATGACTTCGGCAGCTGGAACATTCTGTTATATTGATCCAGAGTATCAGCAAACAGGAATTCTGGGCGTGAAGTCTGATGTTTATTCTTTAGGGATCTTGCTTCTTCAATTATTGACAGGTAGGCCTCCAATGGGATTGGTTCACCAGGTTGGACAGTCTCTTGAGAAGGACACATTCTCTGAAATGCTTGATCCATCTGTGCCTAACTGGCCTCTTGAACAAGCCCTCTGCCTTGCAAAACTAGCTGTCAACTGTGCTGAACTCAGACGAAAAGATCGTCCAGACCTTGGCACAGTAGTATTGACAGAGCTCAATCAACTAAGAGAGTTTGCTGATGCTGAAGAAAACATGACCTTTTTAGGTCCAAGTACCAGCAGTGATGCACCATCTCCCACTCACATACAACAGGATGTGATGAGCGAACCAGGGTTTGAACATTCTGGTGGAAGCTCAAGAAGCCCATCATCAAGCCCCCCAACCCCAACAGACACAAAAGAACAAGAACAAGACGCAGGGGCCAACGATGAGTAA 1782 0.4467 MSFKDPIRPYRQDESLRSQFGRRIGMSARSCMDFAESESDISFVSSRPSSGRSSSVFFDHIDSGRNSRISTSSERSLGSTRMGLKFTTPSSPDNNSFSQDKDKDSSRISFSYSVDNMPNITLNIQDEAETDMKRLKLELKQTMEMYSAACREAITAQHKLMEMNNQRIEEEKKLDEARLSQEAALAIAEKEKARSKAAMETAEAAKKIARVESNRGESIESKAVKEAKEMRKLLDNLAQTDESYRRYTIEEIETATDFFSESRKIGEGGYGPVYKCYIDHTPVAVKVLRADSAQGKSQFQQEVNILGCIRHPNMVLLLGACPEHGILIYEYMANGSLEDCLFRKKKSGLVSWQVRFRIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDHNYVSKISDVGLARLLPAVAENITQYRMTSAAGTFCYIDPEYQQTGILGVKSDVYSLGILLLQLLTGRPPMGLVHQVGQSLEKDTFSEMLDPSVPNWPLEQALCLAKLAVNCAELRRKDRPDLGTVVLTELNQLREFADAEENMTFLGPSTSSDAPSPTHIQQDVMSEPGFEHSGGSSRSPSSSPPTPTDTKEQEQDAGANDE. 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11952 593 Coils Coil 125 180 - -
Seca3g11952 593 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 231 331 - -
Seca3g11952 593 Pfam Protein kinase domain 260 511 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11952 593 SUPERFAMILY Protein kinase-like (PK-like) 242 517 IPR011009 -
Seca3g11952 593 PANTHER OS02G0152300 PROTEIN 43 565 - -
Seca3g11952 593 MobiDBLite consensus disorder prediction 563 584 - -
Seca3g11952 593 MobiDBLite consensus disorder prediction 535 593 - -
Seca3g11952 593 FunFam Os07g0541700 protein 332 424 - -
Seca3g11952 593 Coils Coil 185 205 - -
Seca3g11952 593 MobiDBLite consensus disorder prediction 66 96 - -
Seca3g11952 593 Gene3D Phosphorylase Kinase; domain 1 228 331 - -
Seca3g11952 593 ProSitePatterns Serine/Threonine protein kinases active-site signature. 377 389 IPR008271 GO:0004672|GO:0006468
Seca3g11952 593 SMART serkin_6 259 528 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11952 593 MobiDBLite consensus disorder prediction 535 554 - -
Seca3g11952 593 ProSiteProfiles Protein kinase domain profile. 259 528 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11952 593 MobiDBLite consensus disorder prediction 66 104 - -
Seca3g11952 593 Gene3D Transferase(Phosphotransferase) domain 1 332 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11952 Seca-Chr3 267886928 267890540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11952 6 562 Receptor kinase-like Gene Family AT1G78940 55.846 0.0 590
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Seca3g11952 Pkinase 1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11952 - - gmx:100801601 729.554