Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11934 ATGCATGACCCCTGTATCATCCATAGAGACCTCAACTGCAGCAATGTCTTTGTCAATGGGAGTACTGGTCAGGTTAAGATTGGCGACTTTGGTTTGGCAGCAATTGTGGGCAAGAACCACTTTGCACATTCAATTCTTGGGACACCAGAATTTATGGCACCTAAGTTATATGATGCGGACTATACAAAAATGGTGGACATATACTCATTTGGGATTATAATGATGTTTCTTTTGTCCTCTCTTTTGTTAAGTTCCTCTCTTGGTTTCAAGTTGATATTGGTTGATGCTAATTATCAACTAGCGAAAGGGTGTTAA 315 0.3968 MHDPCIIHRDLNCSNVFVNGSTGQVKIGDFGLAAIVGKNHFAHSILGTPEFMAPKLYDADYTKMVDIYSFGIIMMFLLSSLLLSSSLGFKLILVDANYQLAKGC. 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11934 104 ProSiteProfiles Protein kinase domain profile. 1 104 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11934 104 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 2 74 - -
Seca3g11934 104 Pfam Protein kinase domain 1 80 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11934 104 SUPERFAMILY Protein kinase-like (PK-like) 1 83 IPR011009 -
Seca3g11934 104 Gene3D Transferase(Phosphotransferase) domain 1 1 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11934 Seca-Chr3 267734699 267735013 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11934 2 79 MAP Kinase Kinase Kinase AT5G55560 78.205 6.40e-44 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Seca3g11934 Pkinase 6.2e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11934 K08867 - gmx:100818126 139.813