Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11932 ATGAAGGACAAGGATAAAGATAAGGAGAAAGACACCGCGGAGAAGAAGAAGTACCCTATCGGTGCTGAGCATTACGTTCTCTACGAGGAGATTGGACAGGGTGTCAGCGCCTCTGTCCACCGCGCTCTCTGTATCCCCTTCAACGAGATCATCGCCATCAAAATTCTCGATTTCGAACGTGACAATTGCGATCTGAATAACGTTTCTCGTGAAGCCCAAACAATGATCCTGGTGGACCACCCTAACGTGCTCAAATCACACTGCTCCTTCGTGAGCGACCATAATCTGTGGGTTGTGATGCCATTCATGGCTGGTGGTTCGTGCCTTCACATATTGAAAGCCGCACACCCTGATGGTTTTGAGGAGGTTGTCATTGCAACCATACTCAGAGAGGTGTTGAAGGGTTTAGAGTACCTTCATCATCACGGCCACATCCACAGAGATGTCAAGGCTGGCAACATTCTTATTGATTCACGTGGTGCAATCAAGCTTGGCGATTTTGGTGTCTCTGCTTGCCTTTTTGATTCTGGTGACAGGCAACGCACTAGGAATACATTCGTTGGAACACCTTGCTGGATGGCACCCGAGGTCATGGAGCAACTGCATGGTTATAACTTCAAAGCTGACATCTGGTCATTTGGTATAACAGCATTGGAGCTTGCCCATGGTCATGCTCCTTTTTCAAAGTTTCCACCACTGAAGGTACTACTCATGACTCTGCAAAATGCACCCCCTGGCCTTGACTACGAAAGGGATAGGAAGTTCTCTAAGTCGTTTAAGCAGATGATTGCTAGTTGCTTAGTAAAAGATCCTTCAAAACGACCCTCTGCAAGCAAGTTGTTGAAGCATTCCTTCTTTAAGCAGGCTCGCTCCAATGATTATATTTCACGAACACTTCTGGAGGGGCTGCCTGCTTTAGGTGACCGCATGCAGGCCCTGAAGAGAAAAGAAGAAGATATGCTTGCACAAAAGAAAATGCCTGATGGGCAGATGGAGGAATTATCACAGAGTGAATACAAACGAGGAATTAGTGGCTGGAACTTCAATCTTGAAGATATGAAGGCTCAGGCTTCCTTGATCCACGATTTTGACGATGCCATATCAGATATGGGTCATGTGGGAAGTTCAAGTTCTTTATCCGCACTTGATGCACAAGATAAGCAACTGCCAAGTGCAAGTCATAACCCTTCTCAAACTGCTGATATGGAGGAAAATGGTGAGATGCAAAATCAATCAGCCGCTGTTCCAGTAGCCGATTCAACAGCAAATGATGCCAAGACAAGACTTGAAAAATCTGATGATGACTCTAGCATCACCAGTTCAAGCCTTATCAATGAACCACAAACTTCTGCTTCCTGTCTTGATGATCATGCGGACCATAATTTGGGTGAAAAATCTTATTTGGAAAATGGTGGAAGATGCATGGAGGGCATAAGAGGATGTTCATCAAGCATCTTACCTGAATGTACTCTTCCCCCTATTCGAGCAGAAAGGCATATAAATGACAGTGAGAAGCTACAAAATGTGCCCCAGAACATTTCAAGTTGCAATGCACAGACTGGAGAGGATGTGCTTACTGAACTTCCTTCTAGAGTCTCAAAATCTTCAGTTAATTCTGATGACACTGATGAGAAAGCAAAGGTTCCGGTTGTTCAACAGAGAGGACGTTTTAAGGTTACATCTGAGAACGTTGACCCAGAAAAGGTGGCCCCTTCTCCCGTGCTGCAAAAGAGTCACAGCATGCAGGTTTTCAGCCAGCATAATGCTACTCCTCCTCTACATTCAACTTTACCATTGTTATCAGCACCTGATGCTTCGTCATCAAATATTTCTGGCGGTTCTCTTTTCCCCGTGTTGCATTCTGTGCTGCAGACAAATATTCTTCAAAGGGAGAGCATTCTCAGTTTAATGAAGCAAATTACTGCGGGTGACTCTACAGCTGACGGCGTAAGTACCCCAGCACAGGTAGCAGCAATTGAGAAATCTTTGCTTGAAGCAGCTCACGATAGGGAGAAGGAGTTACTTCATGAGATAACTGAGTTGCAGTGGAGGTGTGATTGCTTTGTCGAAATGGATACTGGGATTTGGATTTCAGAAGTGATTCCGTTGTTTAAGTAG 2118 0.4504 MKDKDKDKEKDTAEKKKYPIGAEHYVLYEEIGQGVSASVHRALCIPFNEIIAIKILDFERDNCDLNNVSREAQTMILVDHPNVLKSHCSFVSDHNLWVVMPFMAGGSCLHILKAAHPDGFEEVVIATILREVLKGLEYLHHHGHIHRDVKAGNILIDSRGAIKLGDFGVSACLFDSGDRQRTRNTFVGTPCWMAPEVMEQLHGYNFKADIWSFGITALELAHGHAPFSKFPPLKVLLMTLQNAPPGLDYERDRKFSKSFKQMIASCLVKDPSKRPSASKLLKHSFFKQARSNDYISRTLLEGLPALGDRMQALKRKEEDMLAQKKMPDGQMEELSQSEYKRGISGWNFNLEDMKAQASLIHDFDDAISDMGHVGSSSSLSALDAQDKQLPSASHNPSQTADMEENGEMQNQSAAVPVADSTANDAKTRLEKSDDDSSITSSSLINEPQTSASCLDDHADHNLGEKSYLENGGRCMEGIRGCSSSILPECTLPPIRAERHINDSEKLQNVPQNISSCNAQTGEDVLTELPSRVSKSSVNSDDTDEKAKVPVVQQRGRFKVTSENVDPEKVAPSPVLQKSHSMQVFSQHNATPPLHSTLPLLSAPDASSSNISGGSLFPVLHSVLQTNILQRESILSLMKQITAGDSTADGVSTPAQVAAIEKSLLEAAHDREKELLHEITELQWRCDCFVEMDTGIWISEVIPLFK. 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11932 705 Gene3D Phosphorylase Kinase; domain 1 13 102 - -
Seca3g11932 705 MobiDBLite consensus disorder prediction 374 457 - -
Seca3g11932 705 Pfam Protein kinase domain 25 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11932 705 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Seca3g11932 705 CDD STKc_OSR1_SPAK 23 286 - -
Seca3g11932 705 SUPERFAMILY Protein kinase-like (PK-like) 23 287 IPR011009 -
Seca3g11932 705 FunFam Serine/threonine-protein kinase BLUS1 14 102 - -
Seca3g11932 705 FunFam serine/threonine-protein kinase BLUS1 isoform X1 106 339 - -
Seca3g11932 705 MobiDBLite consensus disorder prediction 374 418 - -
Seca3g11932 705 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 14 685 IPR047173 GO:0043539
Seca3g11932 705 Gene3D Transferase(Phosphotransferase) domain 1 106 339 - -
Seca3g11932 705 ProSiteProfiles Protein kinase domain profile. 25 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11932 705 MobiDBLite consensus disorder prediction 436 455 - -
Seca3g11932 705 SMART serkin_6 25 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11932 Seca-Chr3 267708616 267717186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11932 14 684 MAP Kinase Kinase Kinase Kinase AT1G79640 63.242 0.0 848
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Seca3g11932 Pkinase 1.2e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11932 K08835 - gmx:100780339 1134.01