Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11928 ATGATGAAGCAACAAAAAGAGGAGTTCATTTTCAGGTCCAAGCTTCCTGATATCTACATTCCCAAACACCTTCCTTTGCATTCATATTGCTTTGAGAATCTATCAGAGTTTGGATCACGTCCCTGTTTGATCAATGCCCCAACGGGTGAAATCTACACCTACAACGATGTGGAGCTTACTTCACGAAGAGTTGCCTCAGGGCTCAACAAATTGGGTGTCCAACAAGGTGATGTGATCATGCTCCTTCTCTCCAATTCCCCAGAATTCGTGTTTGCATTTCTGGGTGCTTCTTTTCGTGGTGCCATCACCACTGCTGCCAACCCTTTCTTCACTCCTGCTGAGGTTGCTAAACAAGCAAAAGCTTCCAATGCCAAGTTGCTTATAACTCAAGCTTCTTACTATGACAAAGTGAAGGATTTGGATCATGTCAAGTTGGTGTTTGTGGATTCTCCCCCAGAGGGGCACATGCATTTCAGTGAATTGGCTCAAACTGATGAGAATGAAATTCCACAAGTGAAGATCAACCCTGATGATGTGGTGGCATTGCCTTATTCATCAGGGACAACAGGGCTCCCAAAAGGGGTTATGCTGACACATAAGGGTTTGGTTACAAGCATAGCACAACAAGTAGATGGTGATAACCCCAACCTTTACTTCCACACTGAGGATGTCATTCTGTGTGTGCTTCCTTTGTTTCACATATACTCTCTCAACTCTGTTCTGCTCTGTGGCTTGAGAGCCAAAGCTGCCATTTTGTTGATGCCAAAGTTTGAGATTAATGCCCTCCTCAATCTAGTTCACAAATACAAGATCACAATTGCCCCAGTTGTGCCACCTATTGTTCTGGCCATTGCTAAGTCCCCTGATCTTGATAAATATGACCTCTCCTCCATTAGGGTCTTGAAATCTGGAGGGGCTCCCCTTGGCAAAGAACTTGAAGACACTGTCAGGGCCAAATTCCCCAAAGCCAAACTTGGACAGGGATATGGGATGACGGAGGCAGGTCCAGTATTGACAATGTGTTTATCATTTGCTAAAGAGGCTATAGATGTAAAACCAGGTGCATGTGGAACTGTTGTTAGGAATGCAGAGATGAAGATTGTTGATCCTGAAACTGATCATTCTTTGCCTCGAAATCAACCTGGTGAAATTTGTATTAGAGGCCACCAAATCATGAAAGGTTATCTAAACGATCCAGAAGCTACTGAGAGAACTATAGACAAAGAAGGATGGTTGCATACGGGTGATATTGGATACATCGACGATGATGATGAGTTATTCATCGTTGATAGGTTGAAGGAATTGATTAAATACAAAGGGTTTCAAGTGGCTCCAGCTGAACTTGAAGCCCTTATTCTCTCACATCCTAAGATCTCAGATGTTGCTGTGGTCCCAATGAAGGATGAAGCAGCTGGTGAGGTCCCAGTTGCATTTGTGGTAAGATCAAATGGTCATACAGACACAACTGAGGATGAAATTAAGCAATTCGTCTCCAAACAGGTGGTGTTTTACAAAAGAATAAACCGAGTATTCTTCATTGATGCGATTCCAAAGTCACCCTCAAGCAAAATATTACGAAAGGACCTAAGGGCTAAGCTTGCCGCAGGTGTTCCAAATTGA 1620 0.434 MMKQQKEEFIFRSKLPDIYIPKHLPLHSYCFENLSEFGSRPCLINAPTGEIYTYNDVELTSRRVASGLNKLGVQQGDVIMLLLSNSPEFVFAFLGASFRGAITTAANPFFTPAEVAKQAKASNAKLLITQASYYDKVKDLDHVKLVFVDSPPEGHMHFSELAQTDENEIPQVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSIAQQVDGDNPNLYFHTEDVILCVLPLFHIYSLNSVLLCGLRAKAAILLMPKFEINALLNLVHKYKITIAPVVPPIVLAIAKSPDLDKYDLSSIRVLKSGGAPLGKELEDTVRAKFPKAKLGQGYGMTEAGPVLTMCLSFAKEAIDVKPGACGTVVRNAEMKIVDPETDHSLPRNQPGEICIRGHQIMKGYLNDPEATERTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALILSHPKISDVAVVPMKDEAAGEVPVAFVVRSNGHTDTTEDEIKQFVSKQVVFYKRINRVFFIDAIPKSPSSKILRKDLRAKLAAGVPN. 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11928 539 SUPERFAMILY Acetyl-CoA synthetase-like 10 535 - -
Seca3g11928 539 Pfam AMP-binding enzyme 34 438 IPR000873 -
Seca3g11928 539 Pfam AMP-binding enzyme C-terminal domain 447 523 IPR025110 -
Seca3g11928 539 CDD 4CL 20 529 - -
Seca3g11928 539 ProSitePatterns Putative AMP-binding domain signature. 182 193 IPR020845 -
Seca3g11928 539 Gene3D - 3 432 IPR042099 -
Seca3g11928 539 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 5 531 - -
Seca3g11928 539 Gene3D - 433 535 IPR045851 -
Seca3g11928 539 FunFam 4-coumarate--CoA ligase 2 434 536 - -
Seca3g11928 539 FunFam Long-chain-fatty-acid--CoA ligase FadD 12 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11928 Seca-Chr3 267664560 267667504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11928 8 501 Monolignol Biosynthesis Gene Families AT1G51680 73.267 0.0 734
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11928 K01904 - gmx:100819192 901.353