Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11927 ATGAGGCCGGTTCAACTACCACCGCCTTCAGCCTCCGCCTCAGGTTCCACCAACCGTGACCGTCCCCAAAGGCGGCGCAGAGACCTCACGCTGCCGTTGCCTCAGCGCGACACAAATTTAGCGGTGCCGCTTCCGCTGCCTCCGTCGAGCGCAGGCAGCGGCGGTAGCGGGAGCGGGAGCGGAGGGACACAACAGCTGATCCCGTTCTCAGAGCTGGAGAGACTGAACCGCATCGGGAGCGGGAGCGGAGGAACGGTTTACAAAGTGGTCCACAGAGGGAGCGGTCGCGTGTTCGCACTGAAGGTGATATACGGACATCACGAGGAGTCGGTGCGTCGGCAGATCCATCGGGAAATCCAGATCCTGAGGGACGTGGACGATCAGAACGTGGTGAGGTGCCATGATATGTACGATCACAACGGAGAAATCCAGGTGCTGTTGGAGTTCATGGACGGAGGGTCTCTGGAAGGGAAACACATCCCGCAGGAGCAGCAGCTAGCGGACGTGACTCGGCAGATCCTGCGAGGACTGGCGTACCTACACCGACGGCACATCGTTCACAGGGACATAAAGCCGTCGAACCTTCTGATTAACTCTCGGAGGCAGGTGAAGATCGCGGACTTCGGTGTAGGTCGGATTCTGAACCAAACAATGGATCCGTGCAATTCGTCGGTGGGGACGATCGCGTACATGAGTCCGGAGAGGATAAACACGGACATCAATGACGGGCAATACGACGCATACGCAGGGGATATATGGAGCCTTGGGGTTAGCATATTGGAGTTTTACATGGGTAGGTTTCCCTTTGCGGTTGGGAGGCAGGGTGATTGGGCGAGTTTGATGTGTGCTATTTGTATGTCTCAACCACCGGAAGCACCTCCAACTGCTTCCCTTGAGTTTAGGGATTTCATCTCACGCTGTTTGCAAAGAGATCCCTCACGCAGATGGACAGCTTCCAGGTTGCTCGCTCACCCCTTTCTTGCTCACTCTAGTCCTCACCACAATCAGCTTCCTCCCAACCTTCATCAACTCCTTCCCCCTCCCCCAAGGCCTCTTCCTTCATAG 1065 0.5671 MRPVQLPPPSASASGSTNRDRPQRRRRDLTLPLPQRDTNLAVPLPLPPSSAGSGGSGSGSGGTQQLIPFSELERLNRIGSGSGGTVYKVVHRGSGRVFALKVIYGHHEESVRRQIHREIQILRDVDDQNVVRCHDMYDHNGEIQVLLEFMDGGSLEGKHIPQEQQLADVTRQILRGLAYLHRRHIVHRDIKPSNLLINSRRQVKIADFGVGRILNQTMDPCNSSVGTIAYMSPERINTDINDGQYDAYAGDIWSLGVSILEFYMGRFPFAVGRQGDWASLMCAICMSQPPEAPPTASLEFRDFISRCLQRDPSRRWTASRLLAHPFLAHSSPHHNQLPPNLHQLLPPPPRPLPS. 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11927 354 Gene3D Phosphorylase Kinase; domain 1 58 151 - -
Seca3g11927 354 ProSiteProfiles Protein kinase domain profile. 72 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11927 354 SMART serkin_6 72 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11927 354 SUPERFAMILY Protein kinase-like (PK-like) 69 349 IPR011009 -
Seca3g11927 354 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 13 331 - -
Seca3g11927 354 FunFam Mitogen-activated protein kinase 2 152 338 - -
Seca3g11927 354 ProSitePatterns Protein kinases ATP-binding region signature. 78 101 IPR017441 GO:0005524
Seca3g11927 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Seca3g11927 354 Gene3D Transferase(Phosphotransferase) domain 1 153 339 - -
Seca3g11927 354 MobiDBLite consensus disorder prediction 51 65 - -
Seca3g11927 354 Pfam Protein kinase domain 73 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11927 354 CDD PKc_MAPKK_plant_like 70 331 - -
Seca3g11927 354 MobiDBLite consensus disorder prediction 1 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11927 Seca-Chr3 267656871 267657935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11927 1 343 MAP Kinase Kinase Gene Family AT1G51660 70.141 1.83e-169 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Seca3g11927 Pkinase 1e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11927 K13413 - gmx:100818488 537.339