Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11909 ATGTCAAACTCCACTAGATGTGCTGCTTGCAAATCTTTAAGGAGAAAATGTCCACCAGATTGTGTGCTAGCGCCATATTTTCCCCCAACCAATCCTGAGAGGTTTTCCTGTGTTCATAAAGTCTTTGGCGCTGGCAATATTACCAGAATGCTACTGGAACTTCGGGAGCATTTACGAGCTGAGGCTGCGGATTGCATGTGTTTTGAAGCGAGTTTACGTGTTAGGGATCCTGTTTATGGAGTCGTTGGAATAATCTCTCAATTGCAACAAGAGATAATACAAACTCAAAACGACATAATAAAGATAAAGGGTGAAACAGCATTTCATAATGCACAGAGACAACGACAGCTGCAGGATCAGCAACAAATGGTTCATGCTAATGATCAAGGTGACCTAGCAGCATTTTCACTTGTCAGTTCAATTGAACAGCAACCCAACCTCAGCATCTGTCAACACCATTTTGATGCGCCAACTTTTGCTGTTTTCCATACATGA 495 0.4222 MSNSTRCAACKSLRRKCPPDCVLAPYFPPTNPERFSCVHKVFGAGNITRMLLELREHLRAEAADCMCFEASLRVRDPVYGVVGIISQLQQEIIQTQNDIIKIKGETAFHNAQRQRQLQDQQQMVHANDQGDLAAFSLVSSIEQQPNLSICQHHFDAPTFAVFHT. 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11909 164 Coils Coil 85 105 - -
Seca3g11909 164 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Seca3g11909 164 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 134 - -
Seca3g11909 164 Pfam Lateral organ boundaries (LOB) domain 6 100 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11909 Seca-Chr3 267529269 267530382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11909 3 107 AS2 family AT3G26660 56.190 6.49e-44 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca3g11909 LOB 1.4e-35 No_clan