Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11908 ATGACTCTGTCTCCTGCCTCCAACGGCCACCTCACCGTTTCCATCTCCACCGGCCACCCTGACACCGACGACCTCCCTCCCTCCGGCAACAATCCCCAAGATGACGACGAAGAACTCGCTGATCCCGATGATCCTTTCGACATTACACAAACCAAGAATGCATCGCACGAGACGCTCAGGCGCTGGAGACAAGCAGCACTTGTGCTCAATGCGTCCAGGCGTTTTAGATATACTCTGGACTTGAAAAAGGAAGAGGAGAAAGAGCAAAAGAAAAGCTTGATTAGAGCCCATGCACAAGTCATAAGAGCAGCACTGCTTTTCAGATTGGCCGGTGAACGTGAACTAGGTAAACTTCTGTTCTTGTCATTTTTGATAAGTACAGCAGCGACTCCTGCAACTCCAGTTGCAGTTGGTGACTATGCAGTTGGGCTAGAACAACTTGCTTCAATGTCTAAGGATCAGAATATTTCTGTTTTACAACAATATGGAGGGATTAAAGGGTTATCAAATTTACTAAAATCAAATGCGGATAAAGGAATTAGTGGAGATGAAGCTGATTTATTGAAAAGGAAAAATGCATTTGGAACTAATACATATCCTCGGAAAAAAGGGAGAAGTTTCTGGAGGTTTTTATGGGAAGCTTGGCAAGATCTGACTCTCATAATATTAATTATAGCAGCTGCAGTGTCATTGGCACTTGGAATAAAAACAGAGGGTTTGGATGAAGGATGGTATGATGGGGGAAGCATTGCATTTGCAGTTTTTCTTGTCATTGTAGTTACAGCTGTCAGTGATTATCGGCAATCTCTGCAGTTTCAGAATTTGAATGCAGAGAAACAAAATATACAATTAGAGGTCATTAGAGGTGGGAGAACAATTAAAATATCGATATTTGATATTGTTGTTGGTGATGTTATACCCCTTAAAATAGGAGATCAGGTTCCTGCTGATGGAGTATTAATCACCGGCCATTCACTTGCAATTGATGAATCCAGTATGACTGGTGAAAGCAAGATTGTTCATAAGGATCACAAAGCACCCTTTTTGATGTCTGGTTGCAAAGTTGCAGATGGAGTTGGTGTCATGCTGGTAACTGGTGTTGGTATAAATACTGAGTGGGGATTGTTGATGGCAAGTATTTCTGAGGACACCGGAGAAGAGACTCCATTACAGGTGCGTTTGAATGGAGTAGCAACTTTTATTGGTATAGTTGGGCTTAGTGTAGCAGTTTTAGTGCTTGCAGTCCTCTTGGGCAGATACTTTTCTGGCCATACAAAAGATTTATATGGAAATCCTGAATTTGTTGCCGGTAAGACTAGCATTAGCAATGCAATAGATGGGGTCATCAAAATTTTTACCATTGCAGTTACAATTGTGGTTGTTGCAGTGCCTGAAGGTCTACCTTTGGCTGTTACTTTAACCCTGGCATACTCAATGCGGAAAATGATGGCAGACAAAGCCTTGGTACGGAGGTTGTCAGCCTGCGAAACTATGGGCTCTGCTACAACAATTTGCAGTGATAAGACAGGAACATTGACCTTAAATCAGATGACTGTCGTCGAGGCATATGTTGGGAGGACAAAACTAAATCCACCAGATGACTCATCAAAGTTGCATCCAGAAGTATTATCTCTGATAAATGAGGGCATTGCACAGAATACAACTGGAAATGTTTTTGTGCCTAAGGAAGGCGGAGAGGCAGAGGTGTCAGGATCTCCTACAGAGAAGGCAATTCTTTCATGGGCAGTCAAGTTGGGCATGAATTTCGGTCTTATCAGATCAACTTCAACAGTTCTTCACGTCTTCCCATTCAATTCTGAGAAAAAGCGAGGTGGTGTTGCCCTGAAGCTGGTGGACTCTGGAGTACATATACATTGGAAAGGAGCTGCAGAGATAGTTCTAGGATCATGTACTCAATATCTTGACTCAAATGGTCACTTGCAATCCATTGGAGAAGAGAAGGCATTTTTCAAGGAGGCTATTGATGACATGGCTGCTCGCAGCCTGCGTTGTGTTGCCATTGCATACAGATCTTATGAATTAGACAAAGTTCCATCTAATGAGGAGTTAGACCAATGGTCCTTGCCAGAACATGAGCTTGTTTTGCTTGCTATTGTTGGAATAAAGGATCCTTGTCGCCCTGGTGTCAAAGATGCTGTGAAAGTATGCACTGATGCTGGTGTTAAGGTACGCATGGTTACTGGGGACAACCTTCAAACAGCAAAGGCAATAGCTTTGGAGTGTGGGATACTGGCTTCAAATGAAGATGCTGTTGAACCAAATATAATTGAAGGAAAGAAATTCCGTGAGCTATCTGAAAAAGAAAGGGAACAGGTTGCCAAGAAAATTACGGTGATGGGAAGGTCTTCTCCTAATGACAAGCTTTTGCTTGTGCAAGCACTACGTAAAGGAGGTGAAGTTGTTGCTGTAACAGGAGATGGCACCAATGATGCTCCTGCACTTCATGAGGCAGATATTGGTCTTTCTATGGGCATCCAAGGAACTGAAGTTGCAAAAGAAAGCTCAGATATTATAATCCTAGATGATAACTTTGCATCTGTAGTAAAGGTTGTCCGCTGGGGCCGCTCTGTATATGCAAATATTCAGAAATTTATCCAGTTCCAGCTTACTGTTAATGTTGCTGCCCTTGTAATAAATGTTGTGGCAGCAATATCATCTGGTGATGTTCCATTAAATGCAGTACAGCTTTTGTGGGTCAACCTTATCATGGACACACTTGGGGCCCTTGCACTGGCTACTGAACCACCAACAGACCACCTAATGCACAGATCACCAGTTGGCCGAAGGGAACCTCTTATAACGAATATCATGTGGAGAAACTTGTTCATTCAGGCTGTCTATCAAATCATTGTTCTTCTTGTTCTTAACTTCTGCGATGAAAGTCTTCTGCCTAAACAAGATACTAGAGCTCATGCCTTTCAAGTGAAGAATACTTTAATATTCAATGCATTCGTCATGTGCCAAATATTCAACGAGTTCAATGCTCGGAAACCAGATGAGATGAATGTCTTCCGAGGAGTGACTAAGAACCGTCTCTTCATGGGAATTATTGGAATTACTTTTATACTTCAGATAATCATCATCGAGTTCCTTGGAAAGTTCACCTCGACAGTGAAGCTTGATTGGAAGCTGTGGCTTGCTTCTCTTTGTATTGGCCTAGTCAGCTGGCCTCTTGCTATAGCTGGAAAATTCATTCCAGTTCCCAAAACACCATTGTCCCGGTACGTATTGAAGCCACTAAGGCGATTAAGGAGGTCTCGTGCTGCACAATAG 3294 0.4268 MTLSPASNGHLTVSISTGHPDTDDLPPSGNNPQDDDEELADPDDPFDITQTKNASHETLRRWRQAALVLNASRRFRYTLDLKKEEEKEQKKSLIRAHAQVIRAALLFRLAGERELGKLLFLSFLISTAATPATPVAVGDYAVGLEQLASMSKDQNISVLQQYGGIKGLSNLLKSNADKGISGDEADLLKRKNAFGTNTYPRKKGRSFWRFLWEAWQDLTLIILIIAAAVSLALGIKTEGLDEGWYDGGSIAFAVFLVIVVTAVSDYRQSLQFQNLNAEKQNIQLEVIRGGRTIKISIFDIVVGDVIPLKIGDQVPADGVLITGHSLAIDESSMTGESKIVHKDHKAPFLMSGCKVADGVGVMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLSVAVLVLAVLLGRYFSGHTKDLYGNPEFVAGKTSISNAIDGVIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEAYVGRTKLNPPDDSSKLHPEVLSLINEGIAQNTTGNVFVPKEGGEAEVSGSPTEKAILSWAVKLGMNFGLIRSTSTVLHVFPFNSEKKRGGVALKLVDSGVHIHWKGAAEIVLGSCTQYLDSNGHLQSIGEEKAFFKEAIDDMAARSLRCVAIAYRSYELDKVPSNEELDQWSLPEHELVLLAIVGIKDPCRPGVKDAVKVCTDAGVKVRMVTGDNLQTAKAIALECGILASNEDAVEPNIIEGKKFRELSEKEREQVAKKITVMGRSSPNDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAISSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRREPLITNIMWRNLFIQAVYQIIVLLVLNFCDESLLPKQDTRAHAFQVKNTLIFNAFVMCQIFNEFNARKPDEMNVFRGVTKNRLFMGIIGITFILQIIIIEFLGKFTSTVKLDWKLWLASLCIGLVSWPLAIAGKFIPVPKTPLSRYVLKPLRRLRRSRAAQ. 1098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11908 1097 Gene3D - 186 381 - -
Seca3g11908 1097 PRINTS P-type cation-transporting ATPase superfamily signature 505 519 - -
Seca3g11908 1097 PRINTS P-type cation-transporting ATPase superfamily signature 704 715 - -
Seca3g11908 1097 PRINTS P-type cation-transporting ATPase superfamily signature 726 736 - -
Seca3g11908 1097 PRINTS P-type cation-transporting ATPase superfamily signature 835 847 - -
Seca3g11908 1097 PRINTS P-type cation-transporting ATPase superfamily signature 811 830 - -
Seca3g11908 1097 PRINTS P-type cation-transporting ATPase superfamily signature 329 343 - -
Seca3g11908 1097 FunFam Calcium-transporting ATPase 260 381 - -
Seca3g11908 1097 FunFam Calcium-transporting ATPase 828 1076 - -
Seca3g11908 1097 SUPERFAMILY HAD-like 503 916 IPR036412 -
Seca3g11908 1097 MobiDBLite consensus disorder prediction 1 29 - -
Seca3g11908 1097 Pfam Cation transporting ATPase, C-terminus 896 1071 IPR006068 -
Seca3g11908 1097 MobiDBLite consensus disorder prediction 30 44 - -
Seca3g11908 1097 Pfam haloacid dehalogenase-like hydrolase 502 825 - -
Seca3g11908 1097 SFLD C1.7: P-type atpase like 487 863 - -
Seca3g11908 1097 Pfam Cation transporter/ATPase, N-terminus 163 230 IPR004014 -
Seca3g11908 1097 SUPERFAMILY Calcium ATPase, transduction domain A 283 378 IPR008250 -
Seca3g11908 1097 SFLD p-type atpase 487 863 IPR044492 -
Seca3g11908 1097 FunFam Calcium-transporting ATPase 704 856 - -
Seca3g11908 1097 SMART Cation_ATPase_N_a_2 161 235 IPR004014 -
Seca3g11908 1097 SUPERFAMILY Calcium ATPase, transmembrane domain M 162 1074 IPR023298 -
Seca3g11908 1097 CDD P-type_ATPase_Ca_PMCA-like 187 944 - -
Seca3g11908 1097 ProSitePatterns E1-E2 ATPases phosphorylation site. 507 513 IPR018303 -
Seca3g11908 1097 PANTHER CATION TRANSPORTING ATPASE 124 1074 - -
Seca3g11908 1097 Pfam E1-E2 ATPase 282 483 - -
Seca3g11908 1097 NCBIfam HAD-IC family P-type ATPase 777 891 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g11908 1097 NCBIfam HAD-IC family P-type ATPase 441 530 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g11908 1097 Gene3D - 515 711 IPR023299 GO:0000166
Seca3g11908 1097 Pfam Ca2+-ATPase N terminal autoinhibitory domain 43 86 IPR024750 GO:0005516
Seca3g11908 1097 NCBIfam calcium-translocating P-type ATPase, PMCA-type 151 1074 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Seca3g11908 1097 FunFam Calcium-transporting ATPase 54 110 - -
Seca3g11908 1097 Gene3D - 502 856 IPR023214 -
Seca3g11908 1097 FunFam Calcium-transporting ATPase 213 270 - -
Seca3g11908 1097 FunFam Calcium-transporting ATPase 515 711 - -
Seca3g11908 1097 Gene3D - 213 1062 - -
Seca3g11908 1097 Gene3D - 54 108 - -
Seca3g11908 1097 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 512 708 IPR023299 GO:0000166
Seca3g11908 1097 MobiDBLite consensus disorder prediction 1 55 - -
Seca3g11908 1097 PRINTS H+-transporting ATPase (proton pump) signature 657 675 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g11908 1097 PRINTS H+-transporting ATPase (proton pump) signature 811 827 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g11908 1097 PRINTS H+-transporting ATPase (proton pump) signature 843 868 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g11908 1097 FunFam Calcium-transporting ATPase 9 plasma membrane-type 359 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11908 Seca-Chr3 267511116 267530143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11908 4 1096 Primary Pumps ATPases AT3G21180 75.982 0.0 1664
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11908 K01537 - gmx:100777845 1832.38