Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11907 ATGGGTGAAGAGGTGAAGGCATTTGTTCCAGAGTCTGTGCTGAAGAAGCAGAAGAGGGAAGAGGAATGGGCATTGGCCAAAAAGCAGGATCTTGAAGCTGCTAAGAAAAAGAGAGCTGAGAGCCGTAAGCTGATCTACAGCAGGGCTAAGCAGTATGCCAAGGAATACGATGAGCAGGAAAAGGAATTGATTAGATTGAAACGTGAGGCAAAGCTGAAAGGTGGATTTTATGTTGATCCAGAGGCTAAGCTCTTGTTTATTGTTCGCATTCGTGGTATTAATGCCATGCATCCCAAGACAAGAAAGATCCTGCAGCTATTGCGATTGAGACAGATTTTCAATGGTGTATTTCTTAAAGTCAACAAAGCAACAATGAACATGCTGCACAGAGTTGAGCCTTATGTGACTTATGGGTACCCAAATTTGAAGAGTGTAAGGGAACTTATTTACAAGAGAGGGTATGGAAAGCTAAACAAGCAGAGAACTGCTCTAACTGACAACTCCATTATTGAGCAGGCACTGGGCAAGTATGGAATCATATCCACTGAAGATCTTATCCATGAGATCTTTACTGTTGGACCTCATTTTAAGGAGGCAAACAACTTCCTTTGGCCATTTAAGCTCAAGGCTCCTTTGGGCGGCTTAAAGAAGAAGAGGAACCACTATGTTGAAGGAGGTGATGCAGGAAACCGGGAGAATTACATCAATGAGCTAATCAGGAGAATGAACTAA 732 0.4276 MGEEVKAFVPESVLKKQKREEEWALAKKQDLEAAKKKRAESRKLIYSRAKQYAKEYDEQEKELIRLKREAKLKGGFYVDPEAKLLFIVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRTALTDNSIIEQALGKYGIISTEDLIHEIFTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN. 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11907 243 FunFam 60S ribosomal protein L7 84 188 - -
Seca3g11907 243 NCBIfam 60S ribosomal protein uL30 10 243 IPR005998 GO:0000463|GO:0003735|GO:0022625
Seca3g11907 243 FunFam 60S ribosomal protein L7 141 203 - -
Seca3g11907 243 Gene3D - 87 238 IPR036919 -
Seca3g11907 243 PANTHER 60S RIBOSOMAL PROTEIN L7 7 243 IPR039699 -
Seca3g11907 243 Pfam Ribosomal protein L30p/L7e 85 135 IPR016082 -
Seca3g11907 243 SUPERFAMILY Ribosomal protein L30p/L7e 84 243 IPR036919 -
Seca3g11907 243 Pfam Ribosomal L30 N-terminal domain 9 80 IPR012988 -
Seca3g11907 243 Gene3D - 141 203 - -
Seca3g11907 243 Coils Coil 49 73 - -
Seca3g11907 243 ProSitePatterns Ribosomal protein L30 signature. 103 135 IPR018038 -
Seca3g11907 243 FunFam 60S ribosomal protein L7 189 243 - -
Seca3g11907 243 CDD Ribosomal_L7_archeal_euk 84 243 IPR035808 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11907 Seca-Chr3 267495476 267497602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11907 4 243 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 85.417 1.16e-154 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11907 K02937 - gmx:100813342 447.973