Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11904 ATGATAATCCTAGGGTGTCATTCTCAGGTTCAAGCTGTATTGCTGTTACTGGGAGGCCGTGAAATACCTCCAACCGCACCTGCCATCCCAATATCTCCTCACCAGAGTAACCGGGGATTTACTGGTACTCCACAAAAATTCAGCGTCCCCCAGAGATTAGCTTCGTTGATTAGATTTCGTGAAAAGAGGAAGGAACGGAATTTTGACAAAAAAATCCGTTACACTGTTCGTAAAGAAGTAGCATTAAGGATGCAAAGAAATAAAGGTCAGTTTACATCTTCCAAGTCCAATCATGATGAATCTGCTTCAGGTGCAACAAATTGGGGAGCAAATGACAGCTGGACAGCAGACAATAATGGATCCCAACAGCAAGAAATTGTTTGTAGGCACTGTGGCATCAGTGAGAAGTGCACACCAATGATGCGACGTGGGCCTGAAGGGCCAAGAACACTCTGCAATGCTTGTGGACTAATGTGGGCAAATAAGGGAACTCTGAGGGATCTATCAAGGGCAGCTACCTTGCCTGGACATAATTCATCATTAAACAAGAATGAGAATAAAAATTCAGAAGCCAACCAGATGGTGGTTAGAGTGGCAGGGGATGCTGATGAATCATCATGA 621 0.4428 MIILGCHSQVQAVLLLLGGREIPPTAPAIPISPHQSNRGFTGTPQKFSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKSNHDESASGATNWGANDSWTADNNGSQQQEIVCRHCGISEKCTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSRAATLPGHNSSLNKNENKNSEANQMVVRVAGDADESS. 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11904 206 ProSitePatterns GATA-type zinc finger domain. 128 155 IPR000679 GO:0006355|GO:0043565
Seca3g11904 206 ProSiteProfiles CCT domain profile. 52 94 IPR010402 GO:0005515
Seca3g11904 206 Pfam CCT motif 52 94 IPR010402 GO:0005515
Seca3g11904 206 PANTHER GATA TRANSCRIPTION FACTOR 28 9 192 IPR045280 GO:0006355
Seca3g11904 206 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 123 186 - -
Seca3g11904 206 MobiDBLite consensus disorder prediction 86 118 - -
Seca3g11904 206 ProSiteProfiles GATA-type zinc finger domain profile. 122 170 IPR000679 GO:0006355|GO:0043565
Seca3g11904 206 MobiDBLite consensus disorder prediction 85 118 - -
Seca3g11904 206 Gene3D - 122 172 IPR013088 GO:0006355|GO:0008270
Seca3g11904 206 SMART GATA_3 122 175 IPR000679 GO:0006355|GO:0043565
Seca3g11904 206 Pfam GATA zinc finger 128 164 IPR000679 GO:0006355|GO:0043565
Seca3g11904 206 CDD ZnF_GATA 127 169 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11904 Seca-Chr3 267469200 267474651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11904 9 205 Tify Gene Family AT1G51600 67.500 3.33e-95 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca3g11904 CCT 4.7e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11904 - - pvu:PHAVU_008G254600g 334.724