Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11901 ATGAAAGACAAGGCTTGTGAGCTTTGCAATCAACAAGCTTTCCTCTATTGCCCTTCCGACGCTGCCTATCTCTGCTGGAACTGCGACGCCACTGTTCATGGCGCCAATTTCCTCGTAGCTCGCCACATCCGCCACAGACTCTGCTCTAAATGCAACTGTTTCACCGGAATTCACATCTCCGGCGCTACAATCTGCTGTCTCCCATCAACCTGTCGCTCTTGCTCGCCGGAAAATCCTTCCGATGATGCCGGTTCCGTCCTTTCTGATTCCTCGGAGTCTTGCACTACAGCACCGAAGAAGACAAAGGCTAGACGCACGACGACGGAGGGGAGGATGAGAAGTTGTTCGAGTTCCGTGACCGATGATGCATCTCCGGCAACGAAAAAGAGGCGGGGGAATGATGGATCGGTGGCGGAGGAGGTGTTTGTGAAATGGAGCAGAGAGTTAGGCTTAGGGTTAGGGTTAGGGGTGAACGGGAATCGCATGGCGTCGCAGGCCCTGGATTTGTGTCTGGGAACGTGGAGGTCTGTACCGTTCAGGGTGGCTGCTGCGACGTCGTTTTGGTTGGGCCTGAGATTTTGTGGGGACGCCACGTATCAGAATCTGTCGAGGTTGGAAGCAATCTCAGGGGTGCCAGCTAAGCTAATTCTAGCCGCACATGCCAAGCTCGCACGTGTCTTCTCACACTGCCGCGAATTGCAAGAAGGATGGGACGAGTCCTAA 723 0.5436 MKDKACELCNQQAFLYCPSDAAYLCWNCDATVHGANFLVARHIRHRLCSKCNCFTGIHISGATICCLPSTCRSCSPENPSDDAGSVLSDSSESCTTAPKKTKARRTTTEGRMRSCSSSVTDDASPATKKRRGNDGSVAEEVFVKWSRELGLGLGLGVNGNRMASQALDLCLGTWRSVPFRVAAATSFWLGLRFCGDATYQNLSRLEAISGVPAKLILAAHAKLARVFSHCRELQEGWDES. 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11901 240 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Seca3g11901 240 MobiDBLite consensus disorder prediction 82 97 - -
Seca3g11901 240 CDD Bbox1_BBX-like 5 47 - -
Seca3g11901 240 SMART bboxneu5 1 47 IPR000315 GO:0008270
Seca3g11901 240 MobiDBLite consensus disorder prediction 82 133 - -
Seca3g11901 240 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 5 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11901 Seca-Chr3 267438535 267439257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11901 6 240 C2C2-CO-like Transcription Factor Family AT3G21150 32.780 2.92e-27 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11901 - - gmx:100781783 303.523