Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11894 ATGTTTAGACACCACCACAACGGAAGATGGGAAGCTCGAATTGGCAGGGTCTTCGGCAACAAATATCTATACCTTGGAACTTATGCTACACAAGAAGAAGCGGCCACGGCATATGATATGGCAGCCATAGAGTACCGAGGACTTAACGCCGTTACAAACTTTGACCTCAGCCGTTATGTCAATTGGTTACGTCCAAAAGCCCAAGAAAATAATCAAGAACTAAACCTTAATTCTGAGCTTGAGCTGGGCCCAAGCCCAACCATTGGTGAGAACAACACCTTCTGCACTTGGGCTTCTCTTACAATCATCCAAATTCAAAGAAATGCTAGAAAAGACGACTACTAG 345 0.4435 MFRHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYVNWLRPKAQENNQELNLNSELELGPSPTIGENNTFCTWASLTIIQIQRNARKDDY. 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11894 114 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 73 - -
Seca3g11894 114 SMART rav1_2 2 61 IPR001471 GO:0003700|GO:0006355
Seca3g11894 114 SUPERFAMILY DNA-binding domain 3 57 IPR016177 GO:0003677
Seca3g11894 114 CDD AP2 2 57 IPR001471 GO:0003700|GO:0006355
Seca3g11894 114 Gene3D AP2/ERF domain 2 57 IPR036955 GO:0003700|GO:0006355
Seca3g11894 114 Pfam AP2 domain 3 47 IPR001471 GO:0003700|GO:0006355
Seca3g11894 114 ProSiteProfiles AP2/ERF domain profile. 1 55 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11894 Seca-Chr3 267384032 267386845 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11894 3 66 AP2-EREBP Transcription Factor Family AT1G16060 85.938 1.62e-29 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca3g11894 AP2 2.2e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11894 K09285 - gmx:100807781 132.494