Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11893 ATGGCTAAGAAATCGCAGAAGAACACTTGTTCTTCTTCTTCTTCTACTGCCAACACCAGGAAACGCACACGCAAAAGCACTCCAAGAGACTCACCTCCGCAACGAAGCTCAATCTACCGCGGTGTCACAAGGCATCGATGGACTGGTCGGTATGAGGCTCATTTGTGGGATAAGAATTGCTGGAATGAATCACAGAGCAAGAAAGGAAGACAAGTGTATCTAGGAGCATATGACGATGAAGAAGCCGCAGCACGTGCCTATGACATGGCAGCATTGAAGTACTGGGGCCATCACACCATGCTCAATTTTCCGGTAAATTCATTAATTCATTCTGTGTCTCATTTCGTAAACAAATTAAAAATTCTATACAAATTAATCTTCTTTTTTTGA 390 0.4282 MAKKSQKNTCSSSSSTANTRKRTRKSTPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQSKKGRQVYLGAYDDEEAAARAYDMAALKYWGHHTMLNFPVNSLIHSVSHFVNKLKILYKLIFFF. 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11893 129 Gene3D AP2/ERF domain 38 106 IPR036955 GO:0003700|GO:0006355
Seca3g11893 129 MobiDBLite consensus disorder prediction 1 21 - -
Seca3g11893 129 Pfam AP2 domain 38 97 IPR001471 GO:0003700|GO:0006355
Seca3g11893 129 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 11 106 - -
Seca3g11893 129 FunFam AP2-like ethylene-responsive transcription factor 37 106 - -
Seca3g11893 129 SMART rav1_2 38 110 IPR001471 GO:0003700|GO:0006355
Seca3g11893 129 PRINTS Ethylene responsive element binding protein signature 39 50 IPR001471 GO:0003700|GO:0006355
Seca3g11893 129 PRINTS Ethylene responsive element binding protein signature 86 106 IPR001471 GO:0003700|GO:0006355
Seca3g11893 129 ProSiteProfiles AP2/ERF domain profile. 38 104 IPR001471 GO:0003700|GO:0006355
Seca3g11893 129 MobiDBLite consensus disorder prediction 1 39 - -
Seca3g11893 129 SUPERFAMILY DNA-binding domain 37 106 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11893 Seca-Chr3 267382630 267383581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11893 2 117 AP2-EREBP Transcription Factor Family AT1G51190 55.462 3.30e-38 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca3g11893 AP2 5.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11893 K09285 - gmx:100819898 172.94