Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11891 ATGCCGGGATTAACGTGCAATGATTGCAACACAGAGTTGAAGGATGACGCAGACCAAAAGCTCCATTACAAGTCCGAGTGGCATCGCTACAACCTCAAGCGCAAGGTTGCCGGGGTTCCTGGGGTGACTGAAGCACTATTTCTTGCTAGACAAGCTGCACTTGCTCAAGAGAAAGATAAATCAAATGAAACCCCCATGCTCTATAGCTGTGGCCTTTGTGGCAAGGATTATAAAAGTTCTAAAGCTCATGCTGAGCATCTTAAATCACGTGGTCATTTGATGCGAGTTTCTGAAGGAACTAGTCAGTCAGATGAGAAGGCAATAATTAAGCCACTTCCGCAACGTGTTGTGAATAGGCCTCCTCCTAAAAGAGAGGTAGATAACTCTGAAAATGAAGAAAGTGAAGACGAATGGGAAGAGGTTGATCCGGAAGATGATTTGGTTGATAATGCTGCAAAGTCCTTGACTGATTTGAATGTGTCTGAGCATGCTGATAATGTTGATATGGATGAAGATGGTGATGATGATGCTTTTGAGGAGTTAGATCCAACGAGTTGCTTTATGTGCGATCAAGGGCACAATACAATAGAGAACTGCATGTCTCACATGCACAAGCACCATGGATTCTTCATTCCAGATGTAGAGTATTTGAAGGATCCAAAAGGCCTCCTTACTTATCTTGGCCTTAAGGTTAAAAGGGACTACATGTGTCTGTACTGCAATGATCGATGTTACCCTTTCAGCAGCCTGGAAGCAGTCAGGAAACATATGGCAGCAAAAGGTCACTGTAAAGTGCATTATGGTGATGGTGATGATGATGAGGAAGTAGAGTTAGAAGAGTTCTACGATTATAGCAGCAGTTATCTGGATGATCAAGGCAAGCAGCTGGTTGTATCTGGTGATTCTAATAACAATATAGAACTTGGTGGTGGGTCTGAGCTCATAATCACTAGGAATTCTGGTGATAGAATATCAACCAGAACACTAGGTTCCCGTGAATTTCTCCGTTATTATCGTCAGAAACCTCGACCATCACCTTTGAATAATATGGCCATCACTGCTGCATTGGCTTCAAGGTACAGGAGCATGGGTTTAGCAACCCTCCAATCAAGGGAGCAAATTGTGAGAATGAAAGTCCTGAAGGAAATGAACAAGTCAGGGGTGGATTATATGCGTACCAAGATAGCGATGAAGAGTAATGTTATCCGAAACCTGCCAAAGAATGTCCCGTATTAG 1236 0.4312 MPGLTCNDCNTELKDDADQKLHYKSEWHRYNLKRKVAGVPGVTEALFLARQAALAQEKDKSNETPMLYSCGLCGKDYKSSKAHAEHLKSRGHLMRVSEGTSQSDEKAIIKPLPQRVVNRPPPKREVDNSENEESEDEWEEVDPEDDLVDNAAKSLTDLNVSEHADNVDMDEDGDDDAFEELDPTSCFMCDQGHNTIENCMSHMHKHHGFFIPDVEYLKDPKGLLTYLGLKVKRDYMCLYCNDRCYPFSSLEAVRKHMAAKGHCKVHYGDGDDDEEVELEEFYDYSSSYLDDQGKQLVVSGDSNNNIELGGGSELIITRNSGDRISTRTLGSREFLRYYRQKPRPSPLNNMAITAALASRYRSMGLATLQSREQIVRMKVLKEMNKSGVDYMRTKIAMKSNVIRNLPKNVPY. 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11891 411 MobiDBLite consensus disorder prediction 84 145 - -
Seca3g11891 411 MobiDBLite consensus disorder prediction 130 145 - -
Seca3g11891 411 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
Seca3g11891 411 SUPERFAMILY beta-beta-alpha zinc fingers 65 98 IPR036236 -
Seca3g11891 411 SUPERFAMILY beta-beta-alpha zinc fingers 170 242 IPR036236 -
Seca3g11891 411 PANTHER ZINC FINGER PROTEIN 622 2 410 IPR040025 -
Seca3g11891 411 ProSitePatterns Zinc finger C2H2 type domain signature. 70 92 IPR013087 -
Seca3g11891 411 Pfam C2H2 type zinc-finger (2 copies) 186 287 IPR041661 -
Seca3g11891 411 SMART c2h2final6 184 206 IPR013087 -
Seca3g11891 411 SMART c2h2final6 68 92 IPR013087 -
Seca3g11891 411 SMART c2h2final6 235 262 IPR013087 -
Seca3g11891 411 SMART c2h2final6 4 28 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11891 Seca-Chr3 267362606 267367013 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11891 1 411 C2H2 Transcription Factor Family AT4G31420 65.301 0.0 521
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca3g11891 zf-C2H2_2 2e-26 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11891 K14816 - gmx:100796317 670.233