Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11886 ATGGTTTTCTTACAAACCTTGTTCTTCCTTTTACTTGTACACCCGATTTTAACATTTGGTCACCCTTCTCATTCTTTGCAAACAGATAAAGCTGCTCTTCTGGAATTCAAAAGAACAATCATATCTGATCCAAATTCCTCACTTGCTAACTGGGATGAAGCTATTCATGTTTGCAACTTCACAGGTGTTGAATGTGATGAATTCCACCACCGTGTCATACGACTACTCCTGTATGATAACCATCTTGTGGGGCCTTTTTCACCTGTCCTTTCCAATCTCACTGGACTTCACATCATTGAGATTGTTAACAGTCACTTGTTTGGCATCATTCCACCAGAGTTATCCTCCCTCACACGTCTCCACCATATCCGTCTTCAAGGGAACAATTTGCATGGTTCCATACCACACTCCTTTTCTCAGCTTTCCAAGCTTAGACTTCTACATATTAAAGAAAGTCATTTAACAGGTTCACTTCCTCCATCTCTCTTTTCCAATTGCACTCTATTGGACAATGTGGACCTTTCTAGCAATTCCCTCAGTGGTAGAATCCCTCAAGAGATTGGAAATTGTCATGCCCTGTGGAGTCTCACTTTATACAACAATCACTTCACTGGACACCTTCCAATCTCTTTGACTAATCTATCAATTGAAAACATAGATGTGGAGTACAATTATCTTTCAGGTGAATTGCCAACAAAGTTAGTAACTAACTGGCCTTATCTTGTTTACCTTCAGCTGTCATACAACAACATGACAAGTCATGATAACAATACCAATCTTGATCCATTTTTCATTGCTCTTAGAAACAGCACTGCTCTAGAGGAGCTTGAATTGGCAGGCATGGACCTTGGGGGAAGGTTCTCCAATACTGTGGTCAGCCAACTTGCCCCAAGTCTAAGAACTTTACTACTTCAGGAAAACCAAATATTTGGATCAATTCCTCATTCCATAGCAAATCTTTCTAGTCTTTCCATCCTCAATTTAACATTCAATCTTCTAAATGGAACTATTTCACATGAGATCTGTAGTTTACCATACTTGGAACAGCTTTTCTTATCACACAACCTGTTCAAAACTTCAATTCCAGAAGCACTGGGCAATTGTCCACATCTGGGTTTACTAGATCTGTCACACAATGAATTTTCAGGTAGGATTCCAGAAAGTTTGGGAAATTTGGTTAGACTAAATTATTTGTTTCTCAACAATAACCTTCTCTCAGGAACAATACCTTGTACATTTGGAAAGTGCACTAATCTTTACAAGCTTGACTTGTCCTATAATAGATTAACAGGAAGCATCCCACAGAATCTCTCAGGCCTGCATGAAATCAGAATCTTCATAAATCTTTCACATAATCACCTTGAAGGCCCGCTTCCAATTGAGCTCAGCAAACTAGAAAAGGTTCAGGAGATAGACCTTTCATCCAATTACCTCACAGGAAGAATATTCCCTCAGATAGCAAGCTGCATTGCAGTTTCATTCATAAATTTTTCAAACAATCTTCTTCAAGGTAAACTACCAGAATCCTTAGGTAATCTGAAGAACCTTGAATCTTTTGATGTTTCAAGAAATCAACTATCTGGATTGATACCAGAAACACTTGCTACAATTGACACACTTACTTTCCTCAATTTATCATTTAACAACCTGGAAGGAGTGATTCCATCTGGTGGTATCTTTAATTCAGTGTCATTTTTGTCATTCTTAGGAAACCCACATGTGTGTGGGAATATTACAGGCATGTCTTTGTGCTCTCAAGGGAGACAGTGGTTCCACACCCGTCTGTTCTTGATTGTGTTAATTTTAGTAATCTCCATATCAACTTTCTTGTCAACAATTTGTTGTGTCACTGGATGCAAGCATCTTAAAGGAATCATCTACTCTAATGAGACTGAGACAGGTAAAAAACAAGTTAGACCAGAGTTCATATCTAACTTCCCAAGAATCACATATAAGGAGTTATCAGATGCCACAAGAGGATTTGATATTGAGAGACTAGTTGGATCAGGTAGATTTGGACATGTCTTCAGGGGAGTTCTTCTAGATGGGACACCAATAGCAGTGAAAGTGCTGCATTTGCAATCTGGAAATTCCACTAAGAGCTTTAACCGAGAATGCCAAGTTTTAAAGAGAATTAGGCACAGGAATCTTATAAGGATTATCACAGCATGCAGTCTACCTGATTTTAAGGCTCTAGTTCTACCTTATATGGCCAATGGAAGCTTGGAGAGCCGCCTTTATCCTTCTTCTGGATCACCAGACTTGAGTATTATCCAGAGGGTGAATATTTGCAGTGACATAGCTGAAGGGATGGCCTATTTGCATCATCATTCCCCTGTCAGAGTGATACACTGTGATCTAAAACCAAGCAATGTGCTTCTCAATGATGACATGACAGCTCTAGTTTCTGATTTTGGCATTGCAAGGTTAATTATGAATGTTGGAGAAGGAAATGGTGGGGTTGTTACTAACATGGGGAACTCTACTGCAAATTTTTTGTGCGGATCCATTGGATACATTGCACCAGAATATGGATTTGGATCAAATACATCTACAAAAGGAGATGTCTATAGCTTTGGCATTCTAGTGCTTGAGATGGTGACTAGAAAAAGATCAACAGATGACATGTTTGTTGGTGGATTAAGTCTACAAAGATGGGTAAAGAGTCACTATCATGGAAGCATTGAAAAAGTGTTAGACCCTACTTTGGTGATAGCTACAAGAGATCAATCTCAGGAGGTAAAGAAAATGTGGGAAATTGCAATTGGGGAGTTAATTGAGCTTGGGATCCTGTGCACACAGGATTCACCTTCTACAAGGCCTACCATGCTTGATGCAGCAGATGACTTGGATCGTCTCAAGAGATACCTTACTGGGGACACAACTTTAACTTTTGCCTCATCTCTTGGAATTTCATCTTCCACTTTTGGTGATTATTAA 2940 0.3925 MVFLQTLFFLLLVHPILTFGHPSHSLQTDKAALLEFKRTIISDPNSSLANWDEAIHVCNFTGVECDEFHHRVIRLLLYDNHLVGPFSPVLSNLTGLHIIEIVNSHLFGIIPPELSSLTRLHHIRLQGNNLHGSIPHSFSQLSKLRLLHIKESHLTGSLPPSLFSNCTLLDNVDLSSNSLSGRIPQEIGNCHALWSLTLYNNHFTGHLPISLTNLSIENIDVEYNYLSGELPTKLVTNWPYLVYLQLSYNNMTSHDNNTNLDPFFIALRNSTALEELELAGMDLGGRFSNTVVSQLAPSLRTLLLQENQIFGSIPHSIANLSSLSILNLTFNLLNGTISHEICSLPYLEQLFLSHNLFKTSIPEALGNCPHLGLLDLSHNEFSGRIPESLGNLVRLNYLFLNNNLLSGTIPCTFGKCTNLYKLDLSYNRLTGSIPQNLSGLHEIRIFINLSHNHLEGPLPIELSKLEKVQEIDLSSNYLTGRIFPQIASCIAVSFINFSNNLLQGKLPESLGNLKNLESFDVSRNQLSGLIPETLATIDTLTFLNLSFNNLEGVIPSGGIFNSVSFLSFLGNPHVCGNITGMSLCSQGRQWFHTRLFLIVLILVISISTFLSTICCVTGCKHLKGIIYSNETETGKKQVRPEFISNFPRITYKELSDATRGFDIERLVGSGRFGHVFRGVLLDGTPIAVKVLHLQSGNSTKSFNRECQVLKRIRHRNLIRIITACSLPDFKALVLPYMANGSLESRLYPSSGSPDLSIIQRVNICSDIAEGMAYLHHHSPVRVIHCDLKPSNVLLNDDMTALVSDFGIARLIMNVGEGNGGVVTNMGNSTANFLCGSIGYIAPEYGFGSNTSTKGDVYSFGILVLEMVTRKRSTDDMFVGGLSLQRWVKSHYHGSIEKVLDPTLVIATRDQSQEVKKMWEIAIGELIELGILCTQDSPSTRPTMLDAADDLDRLKRYLTGDTTLTFASSLGISSSTFGDY. 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11886 979 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 642 736 - -
Seca3g11886 979 Pfam Leucine rich repeat 394 454 IPR001611 GO:0005515
Seca3g11886 979 Pfam Leucine rich repeat 297 356 IPR001611 GO:0005515
Seca3g11886 979 ProSitePatterns Serine/Threonine protein kinases active-site signature. 782 794 IPR008271 GO:0004672|GO:0006468
Seca3g11886 979 SMART serkin_6 661 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11886 979 Gene3D Phosphorylase Kinase; domain 1 642 736 - -
Seca3g11886 979 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Seca3g11886 979 Gene3D Ribonuclease Inhibitor 28 142 IPR032675 -
Seca3g11886 979 Gene3D Ribonuclease Inhibitor 143 216 IPR032675 -
Seca3g11886 979 SMART LRR_typ_2 513 536 IPR003591 -
Seca3g11886 979 SMART LRR_typ_2 344 368 IPR003591 -
Seca3g11886 979 SMART LRR_typ_2 117 140 IPR003591 -
Seca3g11886 979 SMART LRR_typ_2 392 415 IPR003591 -
Seca3g11886 979 SMART LRR_typ_2 416 440 IPR003591 -
Seca3g11886 979 SMART LRR_typ_2 141 165 IPR003591 -
Seca3g11886 979 CDD STKc_IRAK 667 953 - -
Seca3g11886 979 ProSiteProfiles Protein kinase domain profile. 661 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11886 979 PANTHER OS04G0122200 PROTEIN 266 948 - -
Seca3g11886 979 Gene3D Transferase(Phosphotransferase) domain 1 737 963 - -
Seca3g11886 979 FunFam Leucine-rich repeat receptor-like protein kinase 26 185 - -
Seca3g11886 979 ProSiteProfiles Leucine-rich repeat profile. 418 441 IPR001611 GO:0005515
Seca3g11886 979 FunFam LRR receptor-like serine/threonine-protein kinase EFR 290 589 - -
Seca3g11886 979 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 737 962 - -
Seca3g11886 979 Pfam Protein kinase domain 662 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11886 979 SUPERFAMILY L domain-like 27 332 - -
Seca3g11886 979 ProSitePatterns Protein kinases ATP-binding region signature. 667 689 IPR017441 GO:0005524
Seca3g11886 979 SUPERFAMILY L domain-like 294 576 - -
Seca3g11886 979 Gene3D Ribonuclease Inhibitor 217 585 IPR032675 -
Seca3g11886 979 SUPERFAMILY Protein kinase-like (PK-like) 637 950 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11886 Seca-Chr3 267320239 267323563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11886 27 940 Receptor kinase-like Gene Family AT3G47570 34.114 1.73e-155 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca3g11886 Pkinase 1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11886 - - gmx:100815766 1486.47