Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11882 ATGATCATCAACGTGAGAGAGTCGACGATGGTGCGGCCGGCGGAGGAGGTGGCGCGGCGGAGAGTGTGGAACTCGAACGTGGACCTGGTGGTGCCCAATTTTCACACGCCCAGCGTATACTTCTACAGGTCCAACGGCGCCTCCAACTTTTTCGACGCCAAGGTTCTCAAAGAGGCTCTCAGCAAGGTGCTCGTCCCCTTTTATCCAATGGCTGGCCGCCTCCGCCGCGACGAAGACGGCCGCGTCGAGATTGACTGCGACGGCCAAGGAGTGCTCTTCGTCGAGGCCGACACCGGCGCCGTCATCGACGATTTCGGCGACTTCGCGCCAACCCTTCAGCTCCGGCAGCTTATCCCAGCCGTCGATTATTCACACGGAATCGAAACCTATCCCCTATTAGTGTTGCAGGTAACACATTTCAAATGTGGTGGAGTGTCACTGGGTGTTGGCATGCAACATCATGTAGCAGATGGGGCTTCTGGTCTTCACTTCATTAACACATGGTCAGATGTGGCTCGTGGCTTGGATGTTTCCATCCCACCATTCATTGACCGGACACTACTCCGTGCCAGAGATCCACCTCGACCTGTCTTTGATCACATTGAATACAAGCCCCCACCATCCATGAAGACTCCTCCACAACCCACAAAACCAGGCTCAGACAGTGCAGCAGTCTCTATTTTCAAACTGACCCGTGAACAACTCAACACACTGAAAGCTAAGTCCAAAGAAGATGGCAACACAATCAACTACAGCTCTTATGAGATGTTGGCTGGTCATGTGTGGAGAAGTGTATGCAAGGCAAGAGCACTTCCTGATGATCAAGAGACCAAATTGTACATTGCAACTGATGGACGGTCAAGGTTGCAACCTCCCCCTCCACCAGGTTACTTTGGTAATGTGATCTTCACAACCACACCTATTGCTGTGGCAGGTGATCTCATGTCAAAACCAACATGGTATGCTGCAAGCAGAATCCACAATGCCTTGTCACGAATGGATAACGAATACCTGAGATCTGCTCTTGACTATCTAGAGCTACAACCTGATCTTAAAGCTCTTGTTCGTGGGGCACATACTTTCAAGTGTCCAAATCTTGGTATCACTAGCTGGGTTAGGCTTCCAATTCATGATGCTGACTTTGGTTGGGGAAGGCCTATATTCATGGGACCTGGTGGGATTGCATATGAGGGGCTATCTTTCATAATTCCAAGCTCAACAAATGATGGGAGCTTATCTGTGGCAATAGCTCTTCAGCCTGAGCATATGAAAGTGTTTAAGGAGTTTTTGTATGACATTTGA 1302 0.5008 MIINVRESTMVRPAEEVARRRVWNSNVDLVVPNFHTPSVYFYRSNGASNFFDAKVLKEALSKVLVPFYPMAGRLRRDEDGRVEIDCDGQGVLFVEADTGAVIDDFGDFAPTLQLRQLIPAVDYSHGIETYPLLVLQVTHFKCGGVSLGVGMQHHVADGASGLHFINTWSDVARGLDVSIPPFIDRTLLRARDPPRPVFDHIEYKPPPSMKTPPQPTKPGSDSAAVSIFKLTREQLNTLKAKSKEDGNTINYSSYEMLAGHVWRSVCKARALPDDQETKLYIATDGRSRLQPPPPPGYFGNVIFTTTPIAVAGDLMSKPTWYAASRIHNALSRMDNEYLRSALDYLELQPDLKALVRGAHTFKCPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFIIPSSTNDGSLSVAIALQPEHMKVFKEFLYDI. 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11882 433 Pfam Transferase family 3 428 - -
Seca3g11882 433 Gene3D - 1 205 IPR023213 -
Seca3g11882 433 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 8 430 - -
Seca3g11882 433 MobiDBLite consensus disorder prediction 197 222 - -
Seca3g11882 433 FunFam Spermidine hydroxycinnamoyl transferase 1 203 - -
Seca3g11882 433 Gene3D - 213 433 IPR023213 -
Seca3g11882 433 FunFam Tryptamine hydroxycinnamoyl transferase 210 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11882 Seca-Chr3 267293451 267299027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11882 1 433 Monolignol Biosynthesis Gene Families AT5G48930 78.984 0.0 724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11882 K13065 - gmx:100820075 829.706