Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11881 ATGGGGATATACCTCAGCGCCCCGAAAACAGAGAAGGCCTCTGAAGATGGAGAGAACGACAGGCTTCGCTACGGTTTGTCTTCCATGCAGGGCTGGCGTGCTTCCATGGAAGATGCTCATGCAGCTCATCTGTATTTGGACGAGTCTACGTCTTACTTTGGTGTTTATGATGGCCATGGAGGCAAAGCAGTTTCAAAATTTTGTGCGAAGTATCTTCATCAGCAGGTGCTGAAGCACGAAGCTTACGTAGCTGGAGATATAGGCACATCATTACAGAAATCTTTCCTCAGAATGGATGAGATGATGCGTGGACAAAGAGGGTGGAGAGAATTAGCAGTCTTGGGAGATAAAATAGAAAAGTTGTCTGGTATGCTAGAGGGGTTTATATGGTCTCCCAGGAGTAGTGAAGCCAATGACCAAGTTGATGATTGGGCTTTTGAGGAGGGACCTCATTCAGATTTCAGTGGACCAAACTGTGGAAGCACAGCTTGTGTATCCGTCATCCGAGGAAACAAACTTGTTGTCGCAAATGCTGGTGATTCTAGATGTGTTTTATCAAGGAAGGGGCAGGCACACAATTTGTCTAAAGATCACAAGCCTGACCTGGAGGCTGAAAAAGACAGGATTCTAAAAGCTGGTGGTTTTATCCAAGTTGGACGGGTCAATGGAAGTTTGAACTTGGCTAGAGCAATTGGTAATAGAATAGATTTTTTTTGTTATAAATTCTCAATGTAA 735 0.4435 MGIYLSAPKTEKASEDGENDRLRYGLSSMQGWRASMEDAHAAHLYLDESTSYFGVYDGHGGKAVSKFCAKYLHQQVLKHEAYVAGDIGTSLQKSFLRMDEMMRGQRGWRELAVLGDKIEKLSGMLEGFIWSPRSSEANDQVDDWAFEEGPHSDFSGPNCGSTACVSVIRGNKLVVANAGDSRCVLSRKGQAHNLSKDHKPDLEAEKDRILKAGGFIQVGRVNGSLNLARAIGNRIDFFCYKFSM. 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11881 244 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Seca3g11881 244 ProSiteProfiles PPM-type phosphatase domain profile. 23 244 IPR001932 -
Seca3g11881 244 PANTHER PROTEIN PHOSPHATASE 2C 18 233 IPR015655 GO:0004722|GO:0006470
Seca3g11881 244 CDD PP2Cc 23 232 IPR001932 -
Seca3g11881 244 SMART PP2C_4 13 240 IPR001932 -
Seca3g11881 244 SUPERFAMILY PP2C-like 3 237 IPR036457 -
Seca3g11881 244 Gene3D - 1 241 IPR036457 -
Seca3g11881 244 Pfam Protein phosphatase 2C 23 104 IPR001932 -
Seca3g11881 244 Pfam Protein phosphatase 2C 141 233 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11881 Seca-Chr3 267274716 267280752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11881 1 242 PP2C-type Phosphatase Gene Family AT4G31860 77.686 1.69e-140 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11881 K17499 - gmx:100776787 451.825