Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11878 ATGCCTTCAAGACCCATCCCTCCTCCAAGTCCCAGTTTTGTCACCAAAACCAGGGTTCTGTTCCTGGCACTCACCATCTCAGCATCTGTTGTGATCTTCTGCTCACTCCTTTACTTCCTATACCATCTGTGGCACTCACTTGTACACAGAGCTAAAACTATCCCCTTTGAAGCAAGTGCTCCCTTGAAGCTCCAAAGATTCTCATACAAAGAGCTAAAGCATGCCACCAATGGCTTTGACACCGCCAATGTCATTGGCAAAGGTGGCTCTGGCACCGTTTTCAGGGGAATACTTAAAGATGGGAAGCTGGTTGCAGTCAAGCGCCTAGACACGTTGTCTTTGCAGACAGAGCGAGAGTTTCAGAATGAGCTGCAGATTCTTGGTGGGTTACGATCACCTTTTTTGGTGACCCTTTCGGGCTATTCTGTGGAAAAGAACAAGAGAATGTTGGTTTATGAATATATGCCCAACAGAAGCTTGCAGGAGTCCCTCTTTGGAGATGGATGCTTGTGTTTGAGTTGGGAGAGGAGATTTTGCATAATATTGGATGTTGCTAGAGGATTGGAATTCCTGCACCTTGGATGTGATCCACCAGTGATCCATGGGGATATTAAGCCAAGCAATATTCTGCTTGATGCAGAGTATAATGGGAGGATCTCAGACTTTGGGTTATCAAGGATAAAAGTGGAGGGTGAATTTGGTGTAGATTTGTTTAGCCAGGACTTGGGCAAGAGCCAGGAGCTTTGGAAAAGCCAGGAAATTTCAGCCAATCTAACTCCAGAAACTCCTGCTATTGGTACTCCACTTGACAGTGTTAGTGAAGTAGATTTTGCTCTAGCCTTGCAAGCTTCTTCTTCATCCAAAAATAGTAGAACTTGTTTCAATCTTGGAGCTTTGAACTTGAATTCTTTGAACTATAATGCCAATATTGCCAGTGAGAGTGAAATTAGGAGCGGTAATGCAAAGGGAAAAGAAATTTCAATTTCGGATATTGGTGGGGATGATTGGAATTGCAAGTTTGTGCCTTATGATGATGAGTTTTCTAGCATTGATCACAGTAAGGAGTTAACTGTTAACTCTTCTTTGGTGGATGATGAGAAGGCAAATGGGAAACAATGGGGAAAGGACTGGTGGTGGAAACAGGATGGAAATGGTGAATTATGCAGCAAAGACTATGTCATGGAGTGGATAGGGAGTCAGATTTCTCCATCAAACCCTGATTGGGATGATGGAAAGAACAATATTCATGAGAAAATAGAGTTGGAAAATTCAAGTCCATTAGATAAACCCAATGATGCAAATGGACTTCAAATGCAGGTATTTGAGATAGGAAATAATACTAATGATGGAGTTGAGAAGAAAGATCGTAAGAAGAAGCAGAGGAACATGCAAGAGTGGTGGAAAGAAGAGCACCTTGCTGAATTAAGCAAGAAGAGCAGTAATCTGAGAAATCTTCAAACTAAATGGAAGAAAGGCTTGAAAGTACCCCATTTTGATTTAGGTAGGCGATTTTATCTTTGCAGGCGTAATAACTTTGCCGAGGAGAGTCAGAATGAGTGTGATCTTGGAGAGTTTAGTTTCAGGAGAGGTTGGAAGAAGAAAAGTAGTCGTTCCATTGGAAGTGACATGTGGAGTGGAGATCTTTTCAGCCGTGAGCTCAGCAGCACAACTAGCATGAGAGGAACACTGTGTTATGTTGCACCAGAGTATGGTGGGTGTGGATTCTTAATGGAGAAGGCTGACATTTACAGCTTAGGAGTTCTGATTCTTGTAATTGTGTCAGGTAGAAGACCATTACATGTTCTTGCATCCCCCATGAAACTGGAGAAAGCTAACTTAATAAGCTGGTGTAGACACTTGGCTCAAGCTGGTGGTGACATTTTGGAACTGGTAGATGAGAGGTTGAAAGAAGATTACAACAAGGACCAAGCAAGCTTGTGTATTAACTTGGCACTCACTTGCTTACAGAAGATTTCAGAATTGCGCCCAGATATTGGTGATATTGTTAAGATTTTGAAGGGGGATATGGACCTTCCACCACTTCCATTTGAGTTCTCCCCTTCTCCACCTTCCAAATTATACAGCAGATCAAGGAGAAAACCAAAGGGCAATGCAGAATAG 2121 0.4253 MPSRPIPPPSPSFVTKTRVLFLALTISASVVIFCSLLYFLYHLWHSLVHRAKTIPFEASAPLKLQRFSYKELKHATNGFDTANVIGKGGSGTVFRGILKDGKLVAVKRLDTLSLQTEREFQNELQILGGLRSPFLVTLSGYSVEKNKRMLVYEYMPNRSLQESLFGDGCLCLSWERRFCIILDVARGLEFLHLGCDPPVIHGDIKPSNILLDAEYNGRISDFGLSRIKVEGEFGVDLFSQDLGKSQELWKSQEISANLTPETPAIGTPLDSVSEVDFALALQASSSSKNSRTCFNLGALNLNSLNYNANIASESEIRSGNAKGKEISISDIGGDDWNCKFVPYDDEFSSIDHSKELTVNSSLVDDEKANGKQWGKDWWWKQDGNGELCSKDYVMEWIGSQISPSNPDWDDGKNNIHEKIELENSSPLDKPNDANGLQMQVFEIGNNTNDGVEKKDRKKKQRNMQEWWKEEHLAELSKKSSNLRNLQTKWKKGLKVPHFDLGRRFYLCRRNNFAEESQNECDLGEFSFRRGWKKKSSRSIGSDMWSGDLFSRELSSTTSMRGTLCYVAPEYGGCGFLMEKADIYSLGVLILVIVSGRRPLHVLASPMKLEKANLISWCRHLAQAGGDILELVDERLKEDYNKDQASLCINLALTCLQKISELRPDIGDIVKILKGDMDLPPLPFEFSPSPPSKLYSRSRRKPKGNAE. 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11878 706 ProSitePatterns Protein kinases ATP-binding region signature. 85 107 IPR017441 GO:0005524
Seca3g11878 706 Pfam Protein kinase domain 81 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11878 706 ProSiteProfiles Protein kinase domain profile. 79 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11878 706 FunFam putative receptor-like protein kinase At1g80870 155 266 - -
Seca3g11878 706 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Seca3g11878 706 SUPERFAMILY Protein kinase-like (PK-like) 59 692 IPR011009 -
Seca3g11878 706 SMART serkin_6 79 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11878 706 Gene3D Transferase(Phosphotransferase) domain 1 510 677 - -
Seca3g11878 706 Gene3D Transferase(Phosphotransferase) domain 1 155 264 - -
Seca3g11878 706 FunFam Receptor-like serine/threonine-protein kinase At4g25390 528 678 - -
Seca3g11878 706 FunFam Receptor-like serine/threonine-protein kinase At4g25390 48 154 - -
Seca3g11878 706 PANTHER OS07G0586332 PROTEIN 7 700 IPR044576 -
Seca3g11878 706 Gene3D Phosphorylase Kinase; domain 1 53 154 - -
Seca3g11878 706 Coils Coil 468 488 - -
Seca3g11878 706 MobiDBLite consensus disorder prediction 683 706 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11878 Seca-Chr3 267250741 267252861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11878 539 672 Receptor kinase-like Gene Family AT3G58690 29.851 3.79e-12 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Seca3g11878 Pkinase 2e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11878 - - gmx:100807432 1153.27