Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11870 ATGTCTCTGAAGATAGCAGCTGAAAGTTGGCCAAAATCATCAGGATCAGAGAGGGTGGAAGAGTCATTGGTTGTTGTAAGAGAGTATGATGAAGAGAGACACAAAGCTGCAGTTGAGAAATTGGAGAAGCTTTGTGAAATTGGGCAGAGAGGAAAACCATCTCTTGTCACTGACCTCATGGGTGACCCCATATGCCGTATCCGTCACTTTCAGTTACATGTCATGCTGATAAGTACTTACTACTTATTGCTTGGCTTTGGTTTGGTTTGGGCTAATCCATGTTATATTTGCTCCAAACAGGTTGCAGAATATGGAGAAGAAGGTGAAGTTGTTGGGGTGATAAGGGGGTGTGTAAAAACAGTTTCAAGAGGGAATTTGGTTTATGTAAAGTTGGCTTATGTTTTGGGGCTCAGAGTCTCCCCCAGACACAGGAGATTTGGCATTGGGACAAAACTAGTTGAGAATTTAGAGGAGTGGTGTAAGCAAAAGGGGGCAAAGTATGCATATATGGCAACTGATTGCACAAATGAGCCTTCCATCAATTTGTTCACAAAAAAATGTGGCTACTCAAAATTCAGGACTCTAACCATGCTAGTGCAACCTGTTCATGCCCACTACAAGCCAATTAGCAAAAGTGTTGCTGTGCTTCACCTTCCACCACGCCTAGCTGGGTCCATGTATAACCAAATGTTTGCCAATTCAGAATTTTACCCTAAAGACATAGACTTAATTTTGTCAAACAAGCTGAATTTGGGCACTTTCATGGCCATTCCCAAGAAGTACCTCTCCAAATGTGATCCAAAAAGGGGCATTCTCCCTCCAGGCTATGCAATATTAAGTGTGTGGAACACCAAAGAAGTGTTCAAATTGCAAGTGAAAGGGGTGTCACCACTGGCACATGCATGCTGTGTAGGTACAAGATTATTGGATGAATGGATGCCATGGCTAAGGCTACCTTCTTTCCCTGATGTTTTTAGGCCATTTGGGGTTTATTTACTGTATGGACTACACATGGAGGGAAAGTATGGTACTCATCTTATGAAGTCCCTATGTGGATTGGTGCATAACATGGCAAGAGATGATGGTGGTTGTGGGGCCATTGTGGCTGAAATGGGCCTAAGGGACCCAGTAAGAGAGGCAGTCCCACATTGGAGAAAGTTCTCTTGGGCTGAAGACATGTGGTGCATTAAGAATCTTGAGGATATCCCTGAAAAATGTGGGCCTTCTGATTGGTTCACTTCTAGATCCTCTTCGCCAGTGATTTTTGTTGATCCTCGCGATTTTTGA 1287 0.4336 MSLKIAAESWPKSSGSERVEESLVVVREYDEERHKAAVEKLEKLCEIGQRGKPSLVTDLMGDPICRIRHFQLHVMLISTYYLLLGFGLVWANPCYICSKQVAEYGEEGEVVGVIRGCVKTVSRGNLVYVKLAYVLGLRVSPRHRRFGIGTKLVENLEEWCKQKGAKYAYMATDCTNEPSINLFTKKCGYSKFRTLTMLVQPVHAHYKPISKSVAVLHLPPRLAGSMYNQMFANSEFYPKDIDLILSNKLNLGTFMAIPKKYLSKCDPKRGILPPGYAILSVWNTKEVFKLQVKGVSPLAHACCVGTRLLDEWMPWLRLPSFPDVFRPFGVYLLYGLHMEGKYGTHLMKSLCGLVHNMARDDGGCGAIVAEMGLRDPVREAVPHWRKFSWAEDMWCIKNLEDIPEKCGPSDWFTSRSSSPVIFVDPRDF. 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11870 428 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 24 222 IPR000182 GO:0016747
Seca3g11870 428 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 101 196 IPR016181 -
Seca3g11870 428 CDD NAT_SF 101 169 - -
Seca3g11870 428 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 20 79 - -
Seca3g11870 428 Pfam Acetyltransferase (GNAT) family 94 189 IPR000182 GO:0016747
Seca3g11870 428 Gene3D - 95 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11870 Seca-Chr3 267194918 267197552 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Seca3g11870 Acetyltransf_1 7.2e-18 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11870 - - gmx:100799977 719.153