Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11865 ATGGATTGTTCATCATGGGTTAACACATCCTTAGATCTCAACATTAATCCCCATAGAGTTCATGAAGATGTTCCCAAGAAGGAGGTTATAGAAAGCAAACTTTTCTCTTTGGGGATGACCGAGTTTTCTCTCAAAGAAGAGTCCACAAATGAGTTGGAGGAGGAACTGAAGCGCGTGACAGCAGAAAACAAGAAATTGGTGGAAATGCTGTCAGTGGTGTGTGAGAACTACAACACTTTGAGAAGCCACTTGATGGAATATATGAGCAAGAACCCTGAAAAGGAGCTCAGCCCAACATCAAAGAAAAGGAAGTCTGAAAGCAGCAATAACAATAGTAATCTGATGGGAATTAACAATGGAAACTCTGAGAGCAGCTCTACTGATGAAGAAGAATCTTGCAAGAAACCAAAGGAAGAAACCATCAAAGCCAAAATTTCAAGAGTCTATGTCAGGACTGAAACATCAGATACAGGCCTTATTGTGAAAGATGGATATCAGTGGAGGAAATATGGGCAGAAAGTGACCAGAGATAACCCTTGTCCAAGAGCATATTTCAAATGCTCTTTTGCTCCAAGCTGCCCTGTTAAGAAGAAGGTGCAAAGAAGTGTGGATGATCAATCTGTGCTGGTTGCTACATATGAAGGGGAGCACAATCATCCCCAACCATCTCAAATAGAGGCAACATCAGGTTCAGGCCGTAGTGTGAGCCTAGGTTCAGTACCTTGTTCAGCATCTCTCAGCTCTTGCTCACCACCAGCAGTTGTTACCCTGGACTTGACAAAACCTAAGTGCAACACAGAACCCAAAAAAGATTCATCTAAAGTAGTACCTCAGGTTTTGGTGGAACAGATGGCTACTTCTTTGACAACGGATCCTAATTTCAGAGCAGCACTTGTTGCAGCCATCTCAGGAAGATTGATGCACAAGAATTAA 933 0.4244 MDCSSWVNTSLDLNINPHRVHEDVPKKEVIESKLFSLGMTEFSLKEESTNELEEELKRVTAENKKLVEMLSVVCENYNTLRSHLMEYMSKNPEKELSPTSKKRKSESSNNNSNLMGINNGNSESSSTDEEESCKKPKEETIKAKISRVYVRTETSDTGLIVKDGYQWRKYGQKVTRDNPCPRAYFKCSFAPSCPVKKKVQRSVDDQSVLVATYEGEHNHPQPSQIEATSGSGRSVSLGSVPCSASLSSCSPPAVVTLDLTKPKCNTEPKKDSSKVVPQVLVEQMATSLTTDPNFRAALVAAISGRLMHKN. 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11865 310 Coils Coil 42 69 - -
Seca3g11865 310 SMART WRKY_cls 161 221 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g11865 310 Gene3D WRKY domain 144 223 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca3g11865 310 ProSiteProfiles WRKY domain profile. 160 222 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g11865 310 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 40 306 IPR044810 GO:0003700
Seca3g11865 310 MobiDBLite consensus disorder prediction 103 126 - -
Seca3g11865 310 SUPERFAMILY WRKY DNA-binding domain 159 222 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca3g11865 310 MobiDBLite consensus disorder prediction 89 138 - -
Seca3g11865 310 FunFam WRKY transcription factor 40 146 223 - -
Seca3g11865 310 Pfam WRKY DNA -binding domain 162 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11865 Seca-Chr3 267166502 267168600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11865 4 310 WRKY Transcription Factor Family AT1G80840 54.206 4.78e-99 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca3g11865 WRKY 3.6e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11865 - - gmx:100807966 441.425