Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11864 ATGGATCCACCACCACCAAGCAGCACCAACAACCCGAGAAGCATAATCTTCAACAAGTACGAGATGGGGCGGGTCCTGGGTCAGGGCAACTTCGCCAAGGTCTACCATGGCAGAAACCTTGCGACCAACGAGAGCGTGGCCATCAAGGTCATCAAGAAAGACAAGCTCAAAAAAGAGAGGCTTGTCAAACAGATAAAGCGCGAGGTTTCCGTGATGCGTTTGGTTCGTCACCCTCACATCGTGGAGCTCAAGGAAGTGATGGCCACAAAGGGGAAGATCTTCCTCGTCATGGAATACGTCAAAGGCGGTGAACTCTTCGCCAAAGTCGCAAAAGGAAAGCTCAAAGAACAAGTCGCTAGAAAGTACTTTCAACAACTCATCAGCGCCGTCGATTTCTGCCACAGCCGCGGCGTCACCCACCGTGATCTCAAGCCTGAGAATCTCCTCTTGGATGAAAACGAGGACCTTAAAGTCTCCGACTTTGGCCTCTCCGCCTTGCCGGAACAACGCCGTTCCGATGGGATGCTCCTCACACCGTGTGGGACCCCTGCTTATGTTGCACCAGAGGTGTTGAAGAAAAAGGGCTATGATGGTTCCAAGGCTGATATATGGTCCTGTGGTGTCATTCTCTATGCTTTGCTCTGTGGGTATCTTCCATTTCAAGGTGAGAATGTGATGAGGATTTACAGGAAGGCGTTTAAAGCTGAATATGAGTTACCTGATTGGATTTCACCACAGGCCAAGAACTTGATCTCTAATCTGCTTGTTGCTGATCCTGAAAAGAGGTATTCAATCATTGACATCATGCAGGATCCTTGGTTTCAAATTGGGTTCATGAGACCCATTGCTTTTTCGATGAAGGAAGATAACATCAACATTGATTTCAATGAGGATGGAGAAGAAGGAGAGGTTCCTGAAAATGCGTTTGAGATCATTTCGTCTTTGTCACATGGTTTTGATCTTAGGAGCTTGTTTGAGACGAGGAAGCGATCCCCGTCTATGTTCATATCCAAGTTTTCGGCTTCGGCGGTGGTGGAGAAGCTTGAGGAGGTGGCGAAGAAGCTCAAGTTTAGGATAACGGGGAAGAAAGAGTTCATGGTGAGGATGCAGGGGACGAAAGAAGGGAGGAAGGGGAAGCTGGCAATGACAGTGGAGGTTTTTGAGGTGGCGCCGGAGGTGGCGGTGGTTGAGTTTTCTAAGTCTGCCGGAGACACGCTTGAGTACATTAAGTTCTGTGAGGAACAAGTGAGACCTTCCCTCAAAGACATTGTTTGGAGCTGGCAGGGTGACAGTAACTCCAATCAGTAG 1308 0.4878 MDPPPPSSTNNPRSIIFNKYEMGRVLGQGNFAKVYHGRNLATNESVAIKVIKKDKLKKERLVKQIKREVSVMRLVRHPHIVELKEVMATKGKIFLVMEYVKGGELFAKVAKGKLKEQVARKYFQQLISAVDFCHSRGVTHRDLKPENLLLDENEDLKVSDFGLSALPEQRRSDGMLLTPCGTPAYVAPEVLKKKGYDGSKADIWSCGVILYALLCGYLPFQGENVMRIYRKAFKAEYELPDWISPQAKNLISNLLVADPEKRYSIIDIMQDPWFQIGFMRPIAFSMKEDNINIDFNEDGEEGEVPENAFEIISSLSHGFDLRSLFETRKRSPSMFISKFSASAVVEKLEEVAKKLKFRITGKKEFMVRMQGTKEGRKGKLAMTVEVFEVAPEVAVVEFSKSAGDTLEYIKFCEEQVRPSLKDIVWSWQGDSNSNQ. 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11864 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Seca3g11864 435 ProSiteProfiles NAF domain profile. 301 326 IPR018451 GO:0007165
Seca3g11864 435 Gene3D Phosphorylase Kinase; domain 1 13 99 - -
Seca3g11864 435 FunFam Non-specific serine/threonine protein kinase 13 310 - -
Seca3g11864 435 Pfam NAF domain 307 360 IPR004041 GO:0007165
Seca3g11864 435 SMART serkin_6 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11864 435 Gene3D Kinase associated domain 1, KA1 301 426 - -
Seca3g11864 435 FunFam Non-specific serine/threonine protein kinase 12 99 - -
Seca3g11864 435 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 10 421 - -
Seca3g11864 435 ProSitePatterns Protein kinases ATP-binding region signature. 26 53 IPR017441 GO:0005524
Seca3g11864 435 Gene3D Transferase(Phosphotransferase) domain 1 100 277 - -
Seca3g11864 435 FunFam Non-specific serine/threonine protein kinase 304 425 - -
Seca3g11864 435 Pfam Protein kinase domain 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11864 435 SUPERFAMILY Protein kinase-like (PK-like) 16 275 IPR011009 -
Seca3g11864 435 ProSiteProfiles Protein kinase domain profile. 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11864 435 CDD CIPK_C 307 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11864 Seca-Chr3 267125737 267127083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11864 15 435 CBL-interacting serine-threonine protein kinases AT5G25110 62.299 0.0 558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Seca3g11864 Pkinase 1.2e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11864 - - lja:Lj3g3v2118210.1 695.656