Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11862 ATGGTCTTGGATGGCATGACTTTTGCATTGAACACGGTGACCTCCGTGGTGTTTCCATTGGCTGTTCGATCGGTATTTGAGCTGGGCATCTTTGACATCTTAGCTAAAGCAAGTGATGAAGGTGTGAAGCTCTCTGCAGCGGACATTGCGGTTCAGATTGGCTCACAATCACCCACACTGATTGACCGTCTTCTAAGATCATGCTTCATTGGGACCTTTGTTGGACTTAAATCTCGACAAGATCCCATTCCAATCCTGTGGATACTTCACAATTGGAATGATGAAGATTGCTTGAAGTTGTTGAAGAATTGTCATAAAGCTATTCCTGATGATGGAAAAGTGATTGTCGTGGACGCAGTTCTTCCTGTTTTGCCTGAAAATACAACTATTGCAAAGGTTGCTTCCCAAGCTGACCTCATAATGATGACTCAATTCTCTGGAGGAAAAGAGCGAACCCAAAATGAATTCATGAAATTAGCATTGGGATCTGGATTTAGTGGCATTAGAGTCGCCTGTCGTGTCTCTGTCTTCTGCGTGTTGGAGTTCTTTAAGTAG 555 0.4342 MVLDGMTFALNTVTSVVFPLAVRSVFELGIFDILAKASDEGVKLSAADIAVQIGSQSPTLIDRLLRSCFIGTFVGLKSRQDPIPILWILHNWNDEDCLKLLKNCHKAIPDDGKVIVVDAVLPVLPENTTIAKVASQADLIMMTQFSGGKERTQNEFMKLALGSGFSGIRVACRVSVFCVLEFFK. 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11862 184 SUPERFAMILY "Winged helix" DNA-binding domain 4 70 IPR036390 -
Seca3g11862 184 Gene3D Vaccinia Virus protein VP39 83 174 IPR029063 -
Seca3g11862 184 Gene3D - 3 76 IPR036388 -
Seca3g11862 184 Pfam O-methyltransferase domain 81 166 IPR001077 GO:0008171
Seca3g11862 184 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 80 174 IPR029063 -
Seca3g11862 184 PANTHER O-METHYLTRANSFERASE 81 169 IPR016461 GO:0008168
Seca3g11862 184 Pfam Dimerisation domain 22 66 IPR012967 GO:0046983
Seca3g11862 184 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 184 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11862 Seca-Chr3 267113519 267114937 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11862 79 184 Monolignol Biosynthesis Gene Families AT5G54160 43.396 1.26e-27 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11862 K13066 - gmx:100789402 157.147