Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11859 ATGCCTGCCGCTGCTGGTGGCGACAATATTTGGGGGCAAACGGTGTGTGTCACCGGCGCCGGTGGGTTCATAGCCTCTTGGCTGGTCAAACTTCTCTTAGAGAAAGGCTACACTGTCAGAGGAACCGTGCGAAACCCAGGATCAGATGATCCAAAAAATGATCACTTGAAAGAGTTGGAAGGAGCGAAGGAGAGGGTAACTCTGCACAAGGTTGATCTTCTTCATCTTCCTTCTATTCAACCTGTTTTTCGAGGATGCCATGGTGTCTTCCACACAGCTTCTCCGTTTTGTTTTGGTGACTCGATCGATCAGGAAGAGATGTTAGAGCCAGCAGTGAATGGAGCAAAGAATGTGATTGTGGCAGCTGCAGAAGCACAAGTGCGACGCGTGGTCTTCACTTCATCCATTGGCACAGTCTATATGGACCCCAATACCAGTAGGGATGTGCTCGTTGATGAGTCCTGCTGGAGTGATTTGGAGTACTGCAAAAACACTAAGAACTGGTATTGCTATGGGAAGACAGTGGCTGAAAAAACAGCATGGGATGTAGCAAAAGAGAAAGGGGTGGACTTGGTTGTGGTGAACCCAGTTTTGGTTCTTGGACCATTACTACAATCCACCATTAATGCCAGCACAGTTCACATCCTCAAGTACCTCACTGGCTCTGCTAAGACTTATGTCAATGCCACTCAGGCTTATGTAGATGTCAGGGATGTGGCATTAGCACATGCTCTTGTTTATGAGACACCTTCTGTTTCTGGTAGATACATTTGTGCAGAAAGTTCTCTGCATCGTGGTGAGCTAGTTGAAATTCTGGCCAAGTACTTCCCTGAGTACCCACTTCCTACCAAATGTTCAGATGAGAAGAACCCAAGGGTAAAGCCTTACATATTTTCAAATAAAAAGCTGAAAGACTTGGGATTTGAATTCACCCCAGTGAAGCAGTGTTTATATGAAACCGTTAAGAACCTTCAGGAGAAAGGCCACCTTCCTGTCCCCACAAAGGAAGAGGAAGAGGACTCCATTTAA 1029 0.4636 MPAAAGGDNIWGQTVCVTGAGGFIASWLVKLLLEKGYTVRGTVRNPGSDDPKNDHLKELEGAKERVTLHKVDLLHLPSIQPVFRGCHGVFHTASPFCFGDSIDQEEMLEPAVNGAKNVIVAAAEAQVRRVVFTSSIGTVYMDPNTSRDVLVDESCWSDLEYCKNTKNWYCYGKTVAEKTAWDVAKEKGVDLVVVNPVLVLGPLLQSTINASTVHILKYLTGSAKTYVNATQAYVDVRDVALAHALVYETPSVSGRYICAESSLHRGELVEILAKYFPEYPLPTKCSDEKNPRVKPYIFSNKKLKDLGFEFTPVKQCLYETVKNLQEKGHLPVPTKEEEEDSI. 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11859 342 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 12 324 IPR036291 -
Seca3g11859 342 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 14 321 - -
Seca3g11859 342 Gene3D - 12 340 - -
Seca3g11859 342 FunFam Cinnamoyl-CoA reductase 1 7 342 - -
Seca3g11859 342 CDD FR_SDR_e 15 308 - -
Seca3g11859 342 Pfam NAD dependent epimerase/dehydratase family 15 251 IPR001509 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11859 Seca-Chr3 267067430 267071619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11859 12 284 Monolignol Biosynthesis Gene Families AT1G80820 73.260 1.69e-136 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11859 K09753 - gmx:100799994 548.895