Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11853 ATGGACAATGAGGAAATCCCTTCTACACCTGCTACACCAGGGACTCCTGGTGCTCCTCTTTTCGGTGGGTTCAAGTCTGAGAGAGCTAGGAATGGTATTGGCTTTAGTAGGAAGTCCCTCCTCAAGAATTGCAAATGTCTAAGTGTTGAAGAATGGACCATAGAAGATGGAGCCTTGCCCAGAGTCTCTTGTTCTTTGCCACCCCCTCCTATCCCTCTTGCCAAAAAGGTAGGAGCTGAGTTTATAGGTACATTCATTCTGATGTTTGCTGGGATAGCCACTGCTATTGTGAACCAAAAGATAAATGGGTCAGAAACTCTGATTGGATGTGCTGGAGCTACTGGACTTGCTGTCATGATCATCATCCTCTCTACTGGCCACATCTCTGGTGCTCATCTCAACCCTGCTGTCACCATTTCCTTTGCTGCATTAAAGCACTTCCCATGGAAGAATGTACCTGTGTATATTGGTGCACAAGTTTTGGCATCAATATGTGCTGCATTTGCTCTCAAAGGGATTTTTCACCCCTTCATGAGCGGTGGAGTAACTGTTCCTTCAGTTGGAGATGGCCAAGCTTTTGCTTTAGAGTTCATCATCAGCTTTAATCTCATGTTCGTTGTCACTGCTGTTGCCACCGACACAAGAGCTGTGAGTATAATATATCTTATTCTATTAAGAACTTTAGTCCATCTGATATTATATTATCAAATTGAACAAGTGCAGGTGGGAGAGCTTGCGGGAATCGCGGTTGGAGCCACTGTTATGCTCAACATACTCATCGCCGGGCCAGCAACTGGAGGTTCAATGAACCCAGTAAGAACATTAGGTCCTGCAATTGCAGCGAACAACTACAAAGGCGTGTGGTTGTACCTGATAGCTCCCATACTTGGAGCTCTAGGTGGGGCTGGTGCCTACACTGTCGTCAAGCTTCCTGATGAACAATCTGAGGCTCAGGCAAAGGCCTCTTCAGCTCCCGGCAGCTTCAGAATGTGA 993 0.4642 MDNEEIPSTPATPGTPGAPLFGGFKSERARNGIGFSRKSLLKNCKCLSVEEWTIEDGALPRVSCSLPPPPIPLAKKVGAEFIGTFILMFAGIATAIVNQKINGSETLIGCAGATGLAVMIIILSTGHISGAHLNPAVTISFAALKHFPWKNVPVYIGAQVLASICAAFALKGIFHPFMSGGVTVPSVGDGQAFALEFIISFNLMFVVTAVATDTRAVSIIYLILLRTLVHLILYYQIEQVQVGELAGIAVGATVMLNILIAGPATGGSMNPVRTLGPAIAANNYKGVWLYLIAPILGALGGAGAYTVVKLPDEQSEAQAKASSAPGSFRM. 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11853 330 Gene3D Glycerol uptake facilitator protein. 70 322 IPR023271 -
Seca3g11853 330 PRINTS Major intrinsic protein family signature 195 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca3g11853 330 PRINTS Major intrinsic protein family signature 251 273 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca3g11853 330 PRINTS Major intrinsic protein family signature 288 308 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca3g11853 330 PRINTS Major intrinsic protein family signature 114 138 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca3g11853 330 PRINTS Major intrinsic protein family signature 151 170 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca3g11853 330 PRINTS Major intrinsic protein family signature 75 94 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca3g11853 330 ProSitePatterns MIP family signature. 132 140 IPR022357 -
Seca3g11853 330 SUPERFAMILY Aquaporin-like 72 316 IPR023271 -
Seca3g11853 330 Pfam Major intrinsic protein 74 225 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca3g11853 330 Pfam Major intrinsic protein 233 305 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca3g11853 330 MobiDBLite consensus disorder prediction 1 23 - -
Seca3g11853 330 PANTHER AQUAPORIN NIP2-1 42 314 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11853 Seca-Chr3 267005812 267009069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11853 1 322 Major Intrinsic Protein MIP AT1G80760 69.419 7.30e-158 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11853 K09874 - gmx:100815637 434.876