Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11851 ATGGATCTTCCAAGGCCAGAGTCATGCCCATCTGAAAATTTGAACATCATCTCATTTTCAGAAAACCTGCCATGCCAAAAACCTTCTATGGATACTCAAACAGAGAGGAGACAGACAGAAAAGGAAGATAAAAAACACCAACATGTCTCAGCTCCTCATCTTTTACTAGATCTAAGTCTCTCCAGCAAGGATTCAGGTGATGATGACTCAAAGCCAGAACTCAACCTCCTCAACTGTTTCCACACAAATTCATCTGAAAACTCCTCAGAATCTAGTCATGAAAATGAACTGGATCCCCGGGTTTTCTCATGCAACTACTGCCAAAGAAAATTTTATAGTTCCCAGGCACTTGGGGGACACCAGAATGCACACAAGCGTGAAAGAACTTTAGCAAGAAGAGGATACAAAGCTGGTGCTGCAGTTTCAGTAGATTTTGGACAGAGGTACTCCAGCATGGCTTCTCTACCTACACATGGCTTATATAACAAATCACTTGGAATTCAGGTGCATTCTATGATTAACAAACCTTCTTACCAAACACCCCTTTTTGGTTTCTGCCGTCCCCATGGCCAAAATGGGTGGCAAAGACAGCCTTTGGATTCACAACCGGCAATAGGGAAGCTCACATCCGGCAATTTTCATGTGGGGCCAGAAACTGAATCATCCTTTGCTGGTGGCATTCCAAGGTTAGGCAAGTTTTCTACAAGGCTGATGACAGAGGGATTTGGAGGTTACTGCTTGGGTAGTACTAACCATTTGAAGTCTAAACAAGAGAAGTTGCAGAAGCTTGACTTGTCCCTCAAGCTCTAA 810 0.4346 MDLPRPESCPSENLNIISFSENLPCQKPSMDTQTERRQTEKEDKKHQHVSAPHLLLDLSLSSKDSGDDDSKPELNLLNCFHTNSSENSSESSHENELDPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLARRGYKAGAAVSVDFGQRYSSMASLPTHGLYNKSLGIQVHSMINKPSYQTPLFGFCRPHGQNGWQRQPLDSQPAIGKLTSGNFHVGPETESSFAGGIPRLGKFSTRLMTEGFGGYCLGSTNHLKSKQEKLQKLDLSLKL. 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11851 269 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 1 269 IPR044246 GO:0009788
Seca3g11851 269 MobiDBLite consensus disorder prediction 20 53 - -
Seca3g11851 269 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
Seca3g11851 269 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 129 IPR013087 -
Seca3g11851 269 SUPERFAMILY beta-beta-alpha zinc fingers 99 129 IPR036236 -
Seca3g11851 269 Gene3D Classic Zinc Finger 81 149 - -
Seca3g11851 269 MobiDBLite consensus disorder prediction 33 51 - -
Seca3g11851 269 FunFam Zinc finger protein 2 80 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11851 Seca-Chr3 266968079 266968888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11851 39 269 C2H2 Transcription Factor Family AT5G10970 42.975 1.63e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca3g11851 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11851 - - gmx:102666245 377.867