Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11839 ATGGATACAAACTCGACTCTCAAAGTTGGTCTTGAATTCGATAATTTAGAAGAGACATGGCAATTTTGGGTGAACTACGGAGGCATAAAAGGCTTTGGAGTTAGAAAACAATATTCAAGCAAGAGTATGAAAGATGGTTCCCTCACGTCTTACTTATATGTTTGTTGTAAGGAGGGTGTATGGAAACCAGACTCAAGGGATTATAAAACGACCAATCCAAAACCCGAGACAAGAACAGGGTGTATGGCAAGAATGAAAGTCAAATGTTTAATGAAAAATATAAAGTGA 288 0.3715 MDTNSTLKVGLEFDNLEETWQFWVNYGGIKGFGVRKQYSSKSMKDGSLTSYLYVCCKEGVWKPDSRDYKTTNPKPETRTGCMARMKVKCLMKNIK. 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11839 95 Pfam FAR1 DNA-binding domain 21 89 IPR004330 -
Seca3g11839 95 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 8 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11839 Seca-Chr3 266872548 266872835 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g11839 FAR1 7.1e-14 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11839 - - vun:114184605 143.665