Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11837 ATGGCAACGGCAGGTAAGAAGGTGTGCGTAACTGGTGCAGGAGGTTTTGTAGCGTCTTGGCTTGTTAAGCTTCTCCTTTCCAAAGGATACACTGTCCATGGAACTGTCAGACAACCTGGTAGTCAGAAATATGAACACTTGCTGAAACTCGAGAGGGCTTCTGAGAACCTTACACTCTTCAAGGCAGATATCTTGAGTTACGAATCTGTTTACTCAGCAATTGTTGGATGCAGTGCCGTTTTCCATGTTGCTAGCCCTGTACCCTCAACCACTGCAGCCAATCCTGAGGTGATTCTGCAGGTAGAAGTGATTGAGCCTGCAGTGAAGGGAACTGCTAATGTACTTCAAGCTTCTCTTGAAGCCAAAGTGGAACGAGTTGTCTTTGTATCATCTGAAGCTGCTATTTGCATGAATCCCAATTTACCCAAGGATAAAGTGATTGATGAGTCCTATTGGTCTGATAAAGAGTACTGCAGAAAAACTAAGAACTGGTATTGTTTTTCCAAGACAGAGGCAGAGGAGCAAGCCCTGGACTTTGCAAAAAGAACTGGGCTTGGTGTGGTAAGCATTTGTCCTACCCTTGTGTTGGGGCCAATTTTACAGTCAACCACTAATGCAAGTAGCATGGTTCTTCTGAAAATTTTAAAAGAAGGTTCTGACTCGTTGGAGAATAAGCTTCGTTGGATAGTAGATGTGCGAGATCTAGTTGATGCAATACTTTTGGCTTATGAGAAGCCTGAGGCAGAAGGGAGATACATATGCACTTCACACGCTATCAAGCAACGGGATTTGGTGGAGAAATTGAAGAGTATATATCCCGATTACAAGTATCCCACGAACTACACTGAGGTGGATGATTACAGAATGTTGAGCACAGAGAAACTGCAAGGGTTGGGTTGGAAATACAGGCCACTGGAGGAAACAATCATTGATTCTGTTGAGAGCTATCGGGAGGCTGGACTCCTGCAATCTGAATAA 978 0.4417 MATAGKKVCVTGAGGFVASWLVKLLLSKGYTVHGTVRQPGSQKYEHLLKLERASENLTLFKADILSYESVYSAIVGCSAVFHVASPVPSTTAANPEVILQVEVIEPAVKGTANVLQASLEAKVERVVFVSSEAAICMNPNLPKDKVIDESYWSDKEYCRKTKNWYCFSKTEAEEQALDFAKRTGLGVVSICPTLVLGPILQSTTNASSMVLLKILKEGSDSLENKLRWIVDVRDLVDAILLAYEKPEAEGRYICTSHAIKQRDLVEKLKSIYPDYKYPTNYTEVDDYRMLSTEKLQGLGWKYRPLEETIIDSVESYREAGLLQSE. 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11837 325 CDD FR_SDR_e 8 300 - -
Seca3g11837 325 Pfam NAD dependent epimerase/dehydratase family 8 249 IPR001509 -
Seca3g11837 325 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 318 IPR036291 -
Seca3g11837 325 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 7 313 - -
Seca3g11837 325 Gene3D - 1 325 - -
Seca3g11837 325 FunFam NAD(P)-binding Rossmann-fold superfamily protein 1 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11837 Seca-Chr3 266854858 266858242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11837 1 322 Monolignol Biosynthesis Gene Families AT2G33590 63.272 4.85e-140 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11837 - - lja:Lj3g3v2171530.3 505.368