Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11830 ATGAACGGCGAAATTTTCTTACACGCGGATACACCCACCAATTTCTATCTTCACCATGCACCCCAACCGCATGACCCACTTGAACTTCAACCGCACGAAACGACCCTCGAAGGAATCGCCGCGGTTGTCGGAGAACACGTCCTCTTTGGACCCAACCACTGCAAAACGGCAACATCTTCGGGTTGCGTTTCGGTTTCAGAGCCAGGAACGCCGAAAAAGAAGGCAGAAAAGACAGGCACAAGCTACAGAGGAGTGAGGAAGAGACCCTGGGGGAGGTGGTCGGCGGAGATACGCGACCGAATCGGTCGGTGCCGCCACTGGCTGGGGACATTCGACACGGCGGAGGAGGCAGCGCGTGCATACGACGCGGCGGCAAGGCGCTTGAGAGGCTCCAAGGCTCGAACTAACTTCAAGATACCGTCTGTGTTGCCACTATTATCGCCACCCGAACCGAAACGGCCGAAAACGGCACGTAACGGTACTGGAAAGTGCTCTGTGGATGTGGTTACCTCTGTGGAAGAATTGTTCAGCGGCGTGCCTGAAGTTCGAAGAGAAAGAGACAGTAATCATAACGGTGACGTGGAAGTGGACTTGAAGCGCTAG 603 0.5522 MNGEIFLHADTPTNFYLHHAPQPHDPLELQPHETTLEGIAAVVGEHVLFGPNHCKTATSSGCVSVSEPGTPKKKAEKTGTSYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFKIPSVLPLLSPPEPKRPKTARNGTGKCSVDVVTSVEELFSGVPEVRRERDSNHNGDVEVDLKR. 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11830 200 MobiDBLite consensus disorder prediction 180 200 - -
Seca3g11830 200 Gene3D AP2/ERF domain 81 139 IPR036955 GO:0003700|GO:0006355
Seca3g11830 200 SMART rav1_2 81 144 IPR001471 GO:0003700|GO:0006355
Seca3g11830 200 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 72 157 - -
Seca3g11830 200 SUPERFAMILY DNA-binding domain 81 138 IPR016177 GO:0003677
Seca3g11830 200 ProSiteProfiles AP2/ERF domain profile. 81 138 IPR001471 GO:0003700|GO:0006355
Seca3g11830 200 Pfam AP2 domain 81 130 IPR001471 GO:0003700|GO:0006355
Seca3g11830 200 CDD AP2 82 139 IPR001471 GO:0003700|GO:0006355
Seca3g11830 200 PRINTS Ethylene responsive element binding protein signature 82 93 IPR001471 GO:0003700|GO:0006355
Seca3g11830 200 PRINTS Ethylene responsive element binding protein signature 104 120 IPR001471 GO:0003700|GO:0006355
Seca3g11830 200 FunFam Ethylene-responsive transcription factor 2 80 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11830 Seca-Chr3 266793621 266794223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11830 10 144 AP2-EREBP Transcription Factor Family AT1G80580 57.037 3.85e-30 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca3g11830 AP2 5.2e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11830 - - gmx:102667667 207.608