Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11829 ATGGGGGATCCATGCCACCACAATTGGTTCTCCGATATGGAAATACAAGATGATGATTTCTTGAATGAACGGCACAAGATTGTGTCAGTGGAGGATGAAGATGAGATATTTAGAGAGATAATGCATCAACAACCGGCTACAGCTGCTTTCTCTTCTGACAGTGAAAGTCTCTCTCCCACTACCAACAACTTAATCTTCACATCCTCCCAACACAACAAATTACCTGCTGCTCCAACTTCTTACATTCTCTCCTTCGGTGACTCCACCGTTGTCACAGCTACGCGCCACGGCGGAAAACAGCCCTTGCACGACGCTCCCTCTAAACATGAAAATCACTTCCAACAACCAATTAGGCCGCCCAACCAAACAGTAACAAAGAAAAGTAGAAGCTCTACGGAGACACTTGACCACATAATGGCTGAGAGAAAACGGAGACGGGAACTCACAGAGAGGTTCATTGCACTTTCAGCCACTATACCTGGCTTGAAGAAGATTGACAAGTCGACTATACTTGGAGAAGCAATCAGTCATGTGAAACGGCTTCAAGAACGTGTAAGAGAGTTGGAGGAACAAAGTAAGAAGACAAGTGTAGAGTCAGTGTCATTCATTCGAAAATCCTACCTCACAGGCACAGGTGCAATATTGAACAAGTCTGATGATGATGATTGCTATAGAAGCAATGAAGCACTCCCTACAGTGGAAGCAAGAGTCTTCAAAAAGGACATACTCCTCCGGATTCACTGCAAGATACAAAATGGCATTTTGCTCAAAATTCTCGACCATCTTAAAAATCTTCATCTCTCCACAATCAGCAATAGTGTCATGCCATTTGGGAATTCCACTCTTGACATCAGCATTATTGCTCAGATGGGTGACAAATTCAACGTAACAATGGATGATCTAGTCAAAAATCTGAGACTGGCTCTCTTGGAGTCATCTGAAGAATTACAGTGA 954 0.434 MGDPCHHNWFSDMEIQDDDFLNERHKIVSVEDEDEIFREIMHQQPATAAFSSDSESLSPTTNNLIFTSSQHNKLPAAPTSYILSFGDSTVVTATRHGGKQPLHDAPSKHENHFQQPIRPPNQTVTKKSRSSTETLDHIMAERKRRRELTERFIALSATIPGLKKIDKSTILGEAISHVKRLQERVRELEEQSKKTSVESVSFIRKSYLTGTGAILNKSDDDDCYRSNEALPTVEARVFKKDILLRIHCKIQNGILLKILDHLKNLHLSTISNSVMPFGNSTLDISIIAQMGDKFNVTMDDLVKNLRLALLESSEELQ. 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11829 317 Coils Coil 171 198 - -
Seca3g11829 317 MobiDBLite consensus disorder prediction 114 129 - -
Seca3g11829 317 Gene3D - 130 201 IPR036638 GO:0046983
Seca3g11829 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 132 181 IPR011598 GO:0046983
Seca3g11829 317 MobiDBLite consensus disorder prediction 95 134 - -
Seca3g11829 317 PANTHER BHLH TRANSCRIPTION FACTOR 32 311 - -
Seca3g11829 317 SMART finulus 138 187 IPR011598 GO:0046983
Seca3g11829 317 Pfam Helix-loop-helix DNA-binding domain 137 182 IPR011598 GO:0046983
Seca3g11829 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 135 199 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11829 Seca-Chr3 266772103 266773865 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11829 9 309 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 33.434 2.79e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g11829 HLH 4.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11829 - - gmx:100777846 353.214