Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11824 ATGAGTACTGGAGGAGGAGGAGGAGGAGGAGGAGGAACAACAAAAATGCATCACATAATGTCGGAGAGAAAAAGGAGAAGGGAAATAGCTGAGAAATTCGTAGCACTTTCAGCGACTATACCTGGCTTGAAGAAGATAGACAAGTCTTCTGTACTTCATGAAGCCATTAATTACGTGCGACAACTTCAAGAACGCATCGCAGTGCTTGAAAAAGAGAGTAATAAGTCATCAAGTACTATTACTCCTAAGTCATTGATCATCACGAAATCCACAAACTCTAATGAAACGCTCCCAGCTGAAGTGGTAGCAAGAGGCTTAGAGAAGGACGTATTCATTAGAATCCATTGTGAGAAACGAAAGGGCATCATGCTCAAGCTATTGCCCCTACTCAAAGATATTCATCTCTCAATCACCAGATTCAGCATATTGCCATTTGGAGACTCTTTTCTCCACATTATCATAATTGCTCAGATGAGCAAGGAATACACCTTGACATTGAACGACTTGGTGAAGACCTTGAAACAAGACCTTTTGAAGTTGTATGACACGCAACTGTGA 558 0.414 MSTGGGGGGGGGTTKMHHIMSERKRRREIAEKFVALSATIPGLKKIDKSSVLHEAINYVRQLQERIAVLEKESNKSSSTITPKSLIITKSTNSNETLPAEVVARGLEKDVFIRIHCEKRKGIMLKLLPLLKDIHLSITRFSILPFGDSFLHIIIIAQMSKEYTLTLNDLVKTLKQDLLKLYDTQL. 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11824 185 SMART finulus 19 68 IPR011598 GO:0046983
Seca3g11824 185 Coils Coil 52 79 - -
Seca3g11824 185 Gene3D - 12 85 IPR036638 GO:0046983
Seca3g11824 185 Pfam Helix-loop-helix DNA-binding domain 15 63 IPR011598 GO:0046983
Seca3g11824 185 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 13 77 IPR036638 GO:0046983
Seca3g11824 185 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 62 IPR011598 GO:0046983
Seca3g11824 185 PANTHER BHLH TRANSCRIPTION FACTOR 17 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11824 Seca-Chr3 266680257 266686656 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11824 18 177 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.805 1.36e-31 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g11824 HLH 5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11824 - - gmx:100778916 207.223