Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11823 ATGGAGGAATCATGGGAGAATTGGCATCTTCATACGGAAATGGATTGTGATGATGATATTTTCATAGACAAGTGCTACACTGATGATGACGAATTCCTTAGAGAGATCCTCTTGCAGCCATCGGATTTCTCTTCTGAAAGTGAAAGTGATCATCATCTCGTTCATGCTTCCTCCACCGTCCAAAACAATACCTCCACCGCCGCAGAGGGCGGTGTTTTATCATCGGAAGGGATGGAGGAGAAGAGTAAGAGCTGCTCGAACTCCATAAAGCCTCGTCGCTCGTCTTCTCCTAAGACATTCATTCTGTCTTTCGATAACGGTTCTATGATACCAGCTACCCCTGAGCCTTGCCTCAATTATGACCAATTTTTAGGCACCCAACAGGGAAAACGTTCTCCTAAAAATTTGTCCTCTAAACGGACCCTGGATGAACCCAAAGAAAGGCCCAATCACGGGGCAAAGAAGCCCAGAAGCTCTTCTCAGACGATCGACCATATAATGGCAGAGAGAAAAAGGAGACAGGAACTCACAGAAAGGTTCATAGCACTTTCAGCCACCATTCCTGGCTTGAGCAAGACGGACAAAGCATCTGTGCTTCGAGCAGCAATCGATTACGTGAAAAAACTTCAAGAACGTGTGCAGGAGCTTGAAAAACATGACAAAAAAAGGGCTAGTGTGGAGACAGTGATAGTGATCAAGAAACCCGATGTGAGTGGAAATGAATTATTAGACCCCACCTCGAGTGAAACGAGTTGTGATGATTGCAGCATCCTCCCTGAGATTGAAGCAAGAATGTTGGGGAATGAGGTGCTTATTGAGATCCACTGTGAGAAACAAAATGGCATTGAACTCAAAATAATGGACCACCTTGAAAATCTCCACCTCTCTGTCACCGGTAGCAGCGTCTTGCCTTTTGGGAATTCCGCTCTTTCCCTTACTATTATAGCTCAGGTGGGTGAAGGGTACAAAATGACAGTGAATGATTTGGTTAGAAGTCTTAGACAATTGCTCTTGAAGATGGCCAGTAAATGTGATCCGTACTAG 1044 0.4492 MEESWENWHLHTEMDCDDDIFIDKCYTDDDEFLREILLQPSDFSSESESDHHLVHASSTVQNNTSTAAEGGVLSSEGMEEKSKSCSNSIKPRRSSSPKTFILSFDNGSMIPATPEPCLNYDQFLGTQQGKRSPKNLSSKRTLDEPKERPNHGAKKPRSSSQTIDHIMAERKRRQELTERFIALSATIPGLSKTDKASVLRAAIDYVKKLQERVQELEKHDKKRASVETVIVIKKPDVSGNELLDPTSSETSCDDCSILPEIEARMLGNEVLIEIHCEKQNGIELKIMDHLENLHLSVTGSSVLPFGNSALSLTIIAQVGEGYKMTVNDLVRSLRQLLLKMASKCDPY. 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11823 347 PANTHER BHLH TRANSCRIPTION FACTOR 39 339 - -
Seca3g11823 347 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 209 IPR011598 GO:0046983
Seca3g11823 347 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 218 IPR036638 GO:0046983
Seca3g11823 347 SMART finulus 166 215 IPR011598 GO:0046983
Seca3g11823 347 MobiDBLite consensus disorder prediction 125 165 - -
Seca3g11823 347 MobiDBLite consensus disorder prediction 54 71 - -
Seca3g11823 347 MobiDBLite consensus disorder prediction 79 97 - -
Seca3g11823 347 Pfam Helix-loop-helix DNA-binding domain 165 210 IPR011598 GO:0046983
Seca3g11823 347 MobiDBLite consensus disorder prediction 136 154 - -
Seca3g11823 347 Coils Coil 199 219 - -
Seca3g11823 347 MobiDBLite consensus disorder prediction 43 97 - -
Seca3g11823 347 Gene3D - 158 230 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11823 Seca-Chr3 266663084 266665111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11823 157 337 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 48.925 1.29e-43 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g11823 HLH 2.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11823 - - aprc:113857138 416.772