Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11778 ATGGATGTTATTTGCCAAGCAAAATCGGGGATGGGAAAGACTGCTGTTTTTGTTCTGTCAACCCTTCAGCAAATTGATCCTGTTCCTGGTCAGGTTGCAGCTCTTGTTCTTTGCCACACAAGAGAACTGGCTTATCAGATTTGTCACGAATTTGAGAGGTTCAGCACATATCTTCCTGATATAAAAGTTGTTGTTTTCTATGGTGGTGTCAATATCAAGGTTCACAAAGAATTACTCAAGAATGAATGTCCCCATATTGTTGTTGGAACACCTGGGAGAATTCTTGCTCTGACTAGAGATAAGGACCTTGGTTTAAAGAATGTGAGGCATTTTATACTGGATGAGTGTGACAAGATGCTTGAATCACTTGACATGAGAAGAGATGTGCAGGAGATTTTCAAATTGACTCCCCATGACAAACAAGTGATGATGTTTTCAGCAACACTCAGCAAAGAAATCCGACCTGTTTGCAAGAAATTTATGCAAGATCCCATGGAGATTTATGTAGATGATGAGGCCAAATTGACTCTTCATGGTCTGGTGCAGCACTACATCAAATTGCAAGAGTCAGAGAAGAATCGTAAGTTGAACGATCTTCTTGATGCTCTGGACTTCAACCAAGTTGTTATTTTTGTTAAAAGTGTTAGCAGAGCAGCGGAATTGAACAAGTTGCTCGTTGAGTGTAATTTCCCATCGATATGCATACATTCTGGAATGTCTCAGGAAGAAAGGTGCTTGGATTTTAGATCCTTTGGGAGGATTGGTTATTTTCTCATACCGAAACGAACTTAG 792 0.4003 MDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVAALVLCHTRELAYQICHEFERFSTYLPDIKVVVFYGGVNIKVHKELLKNECPHIVVGTPGRILALTRDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLQESEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERCLDFRSFGRIGYFLIPKRT. 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11778 263 SMART ultradead3 1 183 IPR014001 -
Seca3g11778 263 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 251 IPR027417 -
Seca3g11778 263 Gene3D - 1 175 IPR027417 -
Seca3g11778 263 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 2 245 - -
Seca3g11778 263 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 169 IPR027417 -
Seca3g11778 263 CDD DEADc_DDX39 1 169 - -
Seca3g11778 263 Gene3D - 176 255 IPR027417 -
Seca3g11778 263 FunFam DEAD-box ATP-dependent RNA helicase 56-like 1 169 - -
Seca3g11778 263 Pfam DEAD/DEAH box helicase 2 153 IPR011545 GO:0003676|GO:0005524
Seca3g11778 263 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 167 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11778 Seca-Chr3 266108807 266112933 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11778 1 251 Eukaryotic Initiation Factors Gene Family AT5G11170 91.633 5.57e-174 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11778 K12812 - gmx:100785358 484.182