Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11777 ATGACATTTGCCTGTTTCAGATTGAAACGATACAAAGGCTTTAAAGAGGGGAAGCAAAGGATTCTTGTGGCAACAGATTTAGTAGGAAGGGGAATTGATATAGAACGTGTTAATATAGTCGTCAATTATGACATGCCTGATTCTGCTGATACTTATCTGCACAGGGTGGGAAGAGCTGGTAGATTTGGCACCAAGGGGCTTGCAATTACTTTTGTGTCTTCCGCAGCTGATTCTGAAGTTCTTGATCAGGTGCAATCTAGGTTTGAGGTTGATATAAAGGAGCTTCCTGAACAAATTGACACTTCGACATATATGCCTAACTGA 324 0.4105 MTFACFRLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVVNYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSEVLDQVQSRFEVDIKELPEQIDTSTYMPN. 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11777 107 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 98 IPR027417 -
Seca3g11777 107 SMART helicmild6 2 63 IPR001650 -
Seca3g11777 107 CDD SF2_C_DEAD 7 72 - -
Seca3g11777 107 Pfam Helicase conserved C-terminal domain 7 63 IPR001650 -
Seca3g11777 107 Gene3D - 5 107 IPR027417 -
Seca3g11777 107 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 103 IPR001650 -
Seca3g11777 107 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 7 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11777 Seca-Chr3 266106848 266108331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11777 7 107 Eukaryotic Initiation Factors Gene Family AT5G11170 90.099 3.64e-63 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11777 K12812 - gmx:100799082 197.208