Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11761 ATGATATATTCATGTGTATACTTAACAAAGTCTTCTGAACTTGTCCAGATTTGTCACGAATTTGAGAGGTTCAGCACATATCTTCCTGATATAAAAGTTGCTGTTTTCTATGGTGGTGTCAATATCAAGGTTCACAAAGAATTACTCAAGAATGAATGTCCCCATATTGTTGTTGGAACACATGGGAGAATTCTTGCTCTGACTAGAGATAAGGACCTTGGTTTAAAGAATGTGAGGCATTTTATACTGGATGAGTGTGACAAGATGCTTGAATCACTTGGTCTCTTTCTTCCTCCTTTTTTGTAA 306 0.3627 MIYSCVYLTKSSELVQICHEFERFSTYLPDIKVAVFYGGVNIKVHKELLKNECPHIVVGTHGRILALTRDKDLGLKNVRHFILDECDKMLESLGLFLPPFL. 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11761 101 Pfam DEAD/DEAH box helicase 5 92 IPR011545 GO:0003676|GO:0005524
Seca3g11761 101 Gene3D - 3 97 IPR027417 -
Seca3g11761 101 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 101 IPR014001 -
Seca3g11761 101 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 92 IPR027417 -
Seca3g11761 101 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 6 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11761 Seca-Chr3 265984575 265985003 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11761 4 95 Eukaryotic Initiation Factors Gene Family AT5G11170 76.344 2.90e-45 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11761 K12812 - gmx:100808957 157.918