Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11754 ATGCAGAGCTTAAAATCGCCTTTCAAGGGAGTTGTTAATGATATTCGAGGAAGAGCAAAGTGTTATAAAGATGATTGGACTTGTGGTTTCCGATCAGGAATTGGGTTATTGGCCCCAACTACCTATATTTTCTTTGCTTCTGCTCTTCCTGTTATTGCCTTTGGCGAGCAGCTGAATAGAGACACAGATGGAAGGTTGAGCACTGTAGAAACACTGGCTTCTACGGCCATTTGTGGAATCATACACTCAATTTTTGGTGGCCAGCCACTTCTTATTGTAGGAGTTGCAGAACCCACTATCATTATGTACACATACTTGTACAACTTTGCCAAAGATAGGGATGGCTTGGGACAAGAACTCTTTTTGGCTTGGGCAGGATGGGTTTGTGTTTGGACTTCTCTCTTGCTGTTTCTTCTAGCAATATTCAATGCTGCAAGTATCATCAACAGATTCACAAGGGTTGCGGAAGAACTTTTTGGCATGTTGATTGCAGTTTTGTTTATTCAAGAAGCTGTCAAGGGGATGGTAAAGGAGTTTGAGGTTCCTAAAAATGAAAACTCAACATCAGAGCAGTACCAATTTCATTGGCTCTATGTGAATGGGTTACTGGGTGTTATATTCACATTTGGCCTTCTCTATACTGCATTGAAGAGCAGAAGAGCAAGGTCCTGGTTATATGGGACAGGGTGGTTAAGAAGTTTTATTGCAGACTATGGGGTGCCTTTTATGGTGGTAGTGTGGACAGCGATGTCATTCGGAGTGCCAAGAAAACTACCTTCTGAAATTCCAAGAAGACTTGTTGCTCCTCTGGCTTGGGAATCTGCATCTTTACACCATTGGACAGTAATCAAAGACATGGGGAAAGTTTCTCCAACATATATTTTTGCTGCTTTTATTCCTGCCTTGATGGTAGCAGGGCTTTACTTCTTTGACCATAGTGTTGCTTCTGGGATGGCACAACAGAAGGAATTCAATCTCAAGAAACCTTCTGCTTATCATTATGACATTTTGTTACTTGGATTCATGACTTTGCTTTGTGGATTGATTGGCTTACCCCCTTCAAATGGTGTTCTGCCTCAATCCCCCATGCACACCAAGAGCCTTGCTGTTCTCAAGGGTCTGGTATGTGAATAA 1134 0.4215 MQSLKSPFKGVVNDIRGRAKCYKDDWTCGFRSGIGLLAPTTYIFFASALPVIAFGEQLNRDTDGRLSTVETLASTAICGIIHSIFGGQPLLIVGVAEPTIIMYTYLYNFAKDRDGLGQELFLAWAGWVCVWTSLLLFLLAIFNAASIINRFTRVAEELFGMLIAVLFIQEAVKGMVKEFEVPKNENSTSEQYQFHWLYVNGLLGVIFTFGLLYTALKSRRARSWLYGTGWLRSFIADYGVPFMVVVWTAMSFGVPRKLPSEIPRRLVAPLAWESASLHHWTVIKDMGKVSPTYIFAAFIPALMVAGLYFFDHSVASGMAQQKEFNLKKPSAYHYDILLLGFMTLLCGLIGLPPSNGVLPQSPMHTKSLAVLKGLVCE. 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11754 377 PRINTS HCO3- transporter superfamily signature 145 157 IPR003020 GO:0005452|GO:0006820|GO:0016020
Seca3g11754 377 PRINTS HCO3- transporter superfamily signature 237 246 IPR003020 GO:0005452|GO:0006820|GO:0016020
Seca3g11754 377 PRINTS HCO3- transporter superfamily signature 320 333 IPR003020 GO:0005452|GO:0006820|GO:0016020
Seca3g11754 377 PRINTS HCO3- transporter superfamily signature 51 62 IPR003020 GO:0005452|GO:0006820|GO:0016020
Seca3g11754 377 PRINTS HCO3- transporter superfamily signature 166 178 IPR003020 GO:0005452|GO:0006820|GO:0016020
Seca3g11754 377 Pfam HCO3- transporter family 200 371 IPR011531 GO:0006820|GO:0016020
Seca3g11754 377 Pfam HCO3- transporter family 7 183 IPR011531 GO:0006820|GO:0016020
Seca3g11754 377 Gene3D Helical hairpin bin 18 60 - -
Seca3g11754 377 PANTHER ANION EXCHANGE PROTEIN 4 372 IPR003020 GO:0005452|GO:0006820|GO:0016020
Seca3g11754 377 FunFam probable boron transporter 2 18 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11754 Seca-Chr3 265940806 265942837 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11754 5 372 Antiporters AT1G74810 76.087 0.0 606
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11754 K24194 - gmx:100811184 639.802