Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11723 ATGGGTGTGAACTCCAATAGAGTTGATCCCTTTGCTTGCCATGGAAACACTACTACCATTACAATCCAAGCTGAGATACCAATGCCTCCCATGGAAATCCACAAGGTTCGCTTGCCACCTGAACGCACCACTCTTCAAAAACTCAGACACAGGCTCTCTGAGATCTTCTTCCCTGATGACCCACTTCACAGGTTCAAAAACCAAACTTGGTTCATGAAGTTCCTCCTTGGTCTCCAATACTTGTTCCCCATTTTCCAATGGGGACCTGAATACAACCTTGCCCTTCTCCGCTGTGACATCATTTCTGGTCTCACCATTGCTAGCCTCGCCATTCCTCAGGGAATCAGTTATGCCAAGCTTGCAAACTTGCCTCCTATTATTGGATTATATTCTAGTTTTGTGCCACCGTTGATATATTCCTTGCTTGGAAGTTCTAAACACCTTGGAGTTGGTCCTGTTTCCATTGCATCTTTGGTCATGGGATCAATGTTAAGCGAGACAGTTTCTTATACTCAAGATCCAATTCTCTATCTTAAATTGGCTTTCACTGCCACTTTCTTTGCTGGTGTATTCCAATCTTCTCTTGGCATATTAAGGTTAGGCTTTGTAATTGATTTTCTGTCAAAGGCAACGCTTGTGGGATTCATGGCCGGTGCAGCTATCATTGTGTCACTACAGCAGCTCAAAGGGTTGCTTGGAATAGTTCACTTCACCAGCAAGATGCAAATAATACCTGTAATGACCTCTGTTTTCAAGGAAAGAGACGAGCAGTGGTCATGGCAAACAATTTTACTTGGATTCAGTTTCCTAGCCTTCCTGCTGACAACAAGACATATTAGCTTGAGGAAGCCAAAATTATTCTGGGTTTCAGCAGCTGCTCCTTTGGCTTCAGTTATTCTGTCAACCATTTTAGTCTATTTTCTGAGAAAAAAGACTCATTCAATTGCAATTAAAATTTTACTCAAATTACATGTTTTAGATAACATGGTCTCCACCTTAGGCTTAGCTTATATCACACAGACTAAAACTATAACACACCATGAAACTCAACTGAAACTTCTGTTTCAGGAAGGAATTGCTGTAGGAAGAACGTTTGCTGCACTTAAGAACTACCAGGTGGATGGAAACAAAGAAATGATGGCCATTGGTCTTATGAACATAGCTGGCTCTTGTTCTTCATGCTATGTCACAACAGGATCCTTTTCTCGATCAGCTGTTAACTATAATGCTGGAGCACAGACTGCAGTGTCAAATATAATCATGGCTTCAGCTGTTCTTGTGACCCTTTTGTTTCTCATGCCTTTGTTCTATTACACACCGAATGTTGTCCTAGCAGCCATTATCATCACTGCTGTTATTGGGCTAATTGATTATCAAGCTGCATATAAATTGTGGAAGGTTGACAAGCTTGATTTCTTGGCCTGTTTGTGCTCCTTTTTTGGTGTTCTGTTCATTTCAGTGCCTTTAGGCCTTGGAATAGCGGTGGCAATATCAGTCTTCAAGATCCTGCTTCATGTCTCTAGGCCAAACACAATGGTTTTGGGGAATATACCAGGGACACCAATATACCACAACCTAAACCAATATAGAGAAGCTTTAAGGATTCCTTCATTTCTCATTTTGGCTGTTGAGTCTCCCATCTACTTTGCTAATTCAACTTACCTGCAAGAAAGGATATTGAGATGGGTTCGAGAAGAGGAAGAGCGAGTAAAAGCAAACAAAGAAAGTACATTGAAGTGCATCATTTTAGACATGACAGCTGTCACAGCCATAGACACAAGTGGGATCGACACTTTATGTGAACTTAGAAGGATGCTGGACAAAAGATCACTTCAGCTTGTGTTGGCAAATCCTGTTGCAAATGTGATGGAAAAGTTGCATCTGTCAAATATTTTGGAGTCCTTTGGGTTGAAAGGAGTCTATCTCACAGTGGTAGAAGCTGTGGCTGACATTCAATCCTCCTGGAAAGCTCAGCCTTGA 1980 0.4157 MGVNSNRVDPFACHGNTTTITIQAEIPMPPMEIHKVRLPPERTTLQKLRHRLSEIFFPDDPLHRFKNQTWFMKFLLGLQYLFPIFQWGPEYNLALLRCDIISGLTIASLAIPQGISYAKLANLPPIIGLYSSFVPPLIYSLLGSSKHLGVGPVSIASLVMGSMLSETVSYTQDPILYLKLAFTATFFAGVFQSSLGILRLGFVIDFLSKATLVGFMAGAAIIVSLQQLKGLLGIVHFTSKMQIIPVMTSVFKERDEQWSWQTILLGFSFLAFLLTTRHISLRKPKLFWVSAAAPLASVILSTILVYFLRKKTHSIAIKILLKLHVLDNMVSTLGLAYITQTKTITHHETQLKLLFQEGIAVGRTFAALKNYQVDGNKEMMAIGLMNIAGSCSSCYVTTGSFSRSAVNYNAGAQTAVSNIIMASAVLVTLLFLMPLFYYTPNVVLAAIIITAVIGLIDYQAAYKLWKVDKLDFLACLCSFFGVLFISVPLGLGIAVAISVFKILLHVSRPNTMVLGNIPGTPIYHNLNQYREALRIPSFLILAVESPIYFANSTYLQERILRWVREEEERVKANKESTLKCIILDMTAVTAIDTSGIDTLCELRRMLDKRSLQLVLANPVANVMEKLHLSNILESFGLKGVYLTVVEAVADIQSSWKAQP. 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11723 659 Gene3D STAS domain 508 654 IPR036513 -
Seca3g11723 659 ProSitePatterns SLC26A transporters signature. 125 146 IPR018045 GO:0008271|GO:0008272
Seca3g11723 659 ProSiteProfiles STAS domain profile. 528 651 IPR002645 -
Seca3g11723 659 NCBIfam sulfate permease 83 647 IPR001902 GO:0016020|GO:0055085
Seca3g11723 659 Pfam Sulfate permease family 96 476 IPR011547 GO:0016020
Seca3g11723 659 SUPERFAMILY SpoIIaa-like 533 650 IPR036513 -
Seca3g11723 659 CDD STAS_SulP_like_sulfate_transporter 529 644 - -
Seca3g11723 659 Pfam STAS domain 529 647 IPR002645 -
Seca3g11723 659 FunFam Sulfate transporter 31 508 654 - -
Seca3g11723 659 PANTHER SULFATE TRANSPORTER 45 651 IPR001902 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11723 Seca-Chr3 265572818 265577162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11723 1 659 Inorganic Solute Cotransporters AT3G15990 72.222 0.0 962
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11723 K17471 - gmx:100817604 1062.37