Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11721 ATGCCGAAGAACATTCAAAAATCCCTTCAAGACTATCTCTCGAAGATCAAATCCCCTCGCTCACAAATCCATTTACCCTCTAGGAAATGGATTCTCAGAGGCTGCAAGCATCCCAGAACTCCTTCCTTCGCCATAGACGACAAGAAAAACAGAGCACAAGGCGAAGGCAGCAGCAACAAGAACAAGGACGATGAAGCCACACTAGCAGATGTCGACCAATTTCTCTTCGAGAATTTCAAGTCTCTATATCTCAAAGACGATGAAGAAACAGAAAACAACCACAAAACCCACAAGGGACTCCATAACACCAAGAGGGTCTCTGTAGAAGAAAGCCGTGGAAAAGGTCTGAAACTAGGTCCCACATCGTTCGATTCGTCAGAGGAACAGCCACCACTGGATCTCCGTGGATCTAACAGGTTCTTCATGACACGTGGATTTTCGGGGCCCACAGGTGACGAAGCAGGGTCAAGCTCTGCGTCAGGGTCAACACTGAATGAGTCATCAATAAAGGAGGGCAATAATGGCACTGAGAGGCTTCCAGATAACTGTGTGGTGGTGTTGGCGAACTCGGCGAGTCCCTATGAGGATTTCAAGCGATCAATGCAAGGAATGGTGGAGGCGAGGATGAGGAACAATGAAAGGGTGGATTGGGATTTCATGCAAGAGCTATTGTTCTGTTACATAAACATGAATGAGAAGAAGTCTTACAAGTTCATACTCAGTGCTTTTGTCGACTTGATCACTCTCATGCGGCGACCTCCACAGACTGCTCCGGTGAAGGTGAAGCCAAGGAGCGTTCGAACTGTTAGGATTGGTAGGGAGGTCAGGAAGAAGACCAAAGAAGTTACCTTGGAATTTGGCTCCTCGTAA 870 0.4736 MPKNIQKSLQDYLSKIKSPRSQIHLPSRKWILRGCKHPRTPSFAIDDKKNRAQGEGSSNKNKDDEATLADVDQFLFENFKSLYLKDDEETENNHKTHKGLHNTKRVSVEESRGKGLKLGPTSFDSSEEQPPLDLRGSNRFFMTRGFSGPTGDEAGSSSASGSTLNESSIKEGNNGTERLPDNCVVVLANSASPYEDFKRSMQGMVEARMRNNERVDWDFMQELLFCYINMNEKKSYKFILSAFVDLITLMRRPPQTAPVKVKPRSVRTVRIGREVRKKTKEVTLEFGSS. 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11721 289 ProSiteProfiles OVATE domain profile. 186 249 IPR006458 -
Seca3g11721 289 MobiDBLite consensus disorder prediction 150 175 - -
Seca3g11721 289 MobiDBLite consensus disorder prediction 87 176 - -
Seca3g11721 289 MobiDBLite consensus disorder prediction 87 112 - -
Seca3g11721 289 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 65 250 IPR038933 GO:0045892
Seca3g11721 289 MobiDBLite consensus disorder prediction 40 66 - -
Seca3g11721 289 NCBIfam uncharacterized plant-specific domain TIGR01568 184 248 IPR006458 -
Seca3g11721 289 MobiDBLite consensus disorder prediction 39 66 - -
Seca3g11721 289 Pfam Transcriptional repressor, ovate 190 248 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11721 Seca-Chr3 265560678 265561547 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Seca3g11721 Ovate 1.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11721 - - lja:Lj0g3v0139619.1 320.087