Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11708 ATGGATTTCTGGCCAGAATTTCTTGCAAGCAGTTCGGGTAGAGAGTTTGTAGCAGGAGGCTTTGGTGGCACTGCTGGTATAATCTCTGGTTATCCACTGGATACCCTCCGAATCAGGCAACAGAGCTCAAAAGCTGGCTCTGCCTTCACCATCCTTAGACACATGGTGGGTAGGGAAGGACCAGCTTCTCTGTACCGTGGCATGGGCGCACCCTTGGCCTCCGTTTCTTTTCAGAATGCTATGGTTTTCCAAACTTACGCAGTTCTCTCAAGGGCATTTGACTCATCCGCTTCTCCTAGAGACCCTCCTTCCTACAAGGGTGTTGCTTTAGGAGGAATAGGTACTGGGGCTATCCAAAGTTTCTTGCTTTCCCCTGTAGAGTTGGTTAAAATTCGACTTCAGTTGCAGAACGCAGGCCAGTCAACAAGATCCGACAAAGGTCCTGTAATGGTGGCTAAAAATATATGGAGAAGAGAAGGCCTTCGCGGCATCTATCGAGGACTTGGCATCACTGTGATGAGGGATGTGCCTTCCCATGGTTTTTACTTCTGGACATATGAATACATGAGAGAACAACTTCACCCAGGTTGCAGAAAAAGTGGACAAGAAAGTCTCAATACCATGTTAATAGCTGGAGGATTAGCTGGGGTAGCAAGTTGGATTTGCTGCTACCCTTTTGATGTTGTAAAGACAAGACTACAAGGTCAAACACCCTCTTCTCTGAAATACAAAGGCATTTTTGATTGCTTCAAAAAGAGCATTAATGAAGAAGGATATGCTGTGCTATGGCGGGGTTTGGGAACGGCAGTTGCCAGAGCATTTGTAGTGAATGGTGCCATATTTTCTGCTTATGAGATCACACTAAGGGTTCTCTTTAACAATGGAAACATTCCAATGCAGGAAACAATTTAG 912 0.4561 MDFWPEFLASSSGREFVAGGFGGTAGIISGYPLDTLRIRQQSSKAGSAFTILRHMVGREGPASLYRGMGAPLASVSFQNAMVFQTYAVLSRAFDSSASPRDPPSYKGVALGGIGTGAIQSFLLSPVELVKIRLQLQNAGQSTRSDKGPVMVAKNIWRREGLRGIYRGLGITVMRDVPSHGFYFWTYEYMREQLHPGCRKSGQESLNTMLIAGGLAGVASWICCYPFDVVKTRLQGQTPSSLKYKGIFDCFKKSINEEGYAVLWRGLGTAVARAFVVNGAIFSAYEITLRVLFNNGNIPMQETI. 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11708 303 ProSiteProfiles Solute carrier (Solcar) repeat profile. 103 192 IPR018108 -
Seca3g11708 303 ProSiteProfiles Solute carrier (Solcar) repeat profile. 203 290 IPR018108 -
Seca3g11708 303 FunFam Mitochondrial arginine transporter BAC2 11 301 - -
Seca3g11708 303 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 92 IPR018108 -
Seca3g11708 303 PRINTS Mitochondrial carrier protein signature 212 234 IPR002067 GO:0055085
Seca3g11708 303 PRINTS Mitochondrial carrier protein signature 118 136 IPR002067 GO:0055085
Seca3g11708 303 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085
Seca3g11708 303 PRINTS Mitochondrial carrier protein signature 165 183 IPR002067 GO:0055085
Seca3g11708 303 Gene3D Mitochondrial carrier domain 14 297 IPR023395 -
Seca3g11708 303 SUPERFAMILY Mitochondrial carrier 14 285 IPR023395 -
Seca3g11708 303 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 10 291 - -
Seca3g11708 303 Pfam Mitochondrial carrier protein 110 193 IPR018108 -
Seca3g11708 303 Pfam Mitochondrial carrier protein 12 93 IPR018108 -
Seca3g11708 303 Pfam Mitochondrial carrier protein 207 294 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11708 Seca-Chr3 265485954 265489071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11708 1 298 Antiporters AT1G79900 71.572 6.86e-149 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11708 K15109 - gmx:100812056 538.88