Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11702 ATGCAGGGTAAGGGAACAGGAAGCTTCGGTAAGAGGAGGAACAAGACCCACACTCTCTGTGTGAGGTGTGGCCGCCGCAGCTTCCACCTCCAAAAGAGTCGCTGCGCAGCCTGCGCTTTCCCTGCTGCCCGCAAAAGGAAATGTAAGTGTCTTGCTTTTCAGGGAACGGGTCTTGTGTCAAAATTCAATTTTGACTTGCTTTAA 204 0.5147 MQGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKCKCLAFQGTGLVSKFNFDLL. 68
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11702 67 Pfam Ribosomal protein L37e 4 49 IPR001569 GO:0003735|GO:0005840|GO:0006412
Seca3g11702 67 Gene3D - 1 53 IPR011331 GO:0003735|GO:0005840|GO:0006412
Seca3g11702 67 SUPERFAMILY Zn-binding ribosomal proteins 3 48 IPR011332 GO:0006412
Seca3g11702 67 ProSitePatterns Ribosomal protein L37e signature. 5 24 IPR018267 GO:0003735|GO:0005840|GO:0006412
Seca3g11702 67 PANTHER 60S RIBOSOMAL PROTEIN L37 3 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11702 Seca-Chr3 265454410 265455403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11702 3 49 Cytoplasmic Ribosomal Protein Gene Family AT3G16080 89.362 5.20e-26 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11702 K02922 - cpap:110810878 99.7525