Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11696 ATGTCGTCTCCGCCGCCGGAGACCTCCCCCGGAATTAACTCCACCGCCTCTCCTCCTCTGCCCACTGTTCCCACCAATGCAACCGCCTCTCCTCCGTCGCCGGCGGTCCCCACCACTCCGACCAATGTCACGCCGGATCCTTTTTTTCCGGAGAAGTCTCCGCCGGATAAGGGCGGGTTGCCGAAGGGTACACTGGACGGAATAATTATAGGGGTTGTGTTAGGTTCAGTAGGTATGCTTATCGTCGGGGGCATTTTCATCATTTTGTATAGAAATCGGAAAAGGAGGAGACGCCGGAACAAATACTCCGATTCTCCTCCGCAACCGCCACAACCGAAAGCTGACCAGGTTGGTGGCATATTTCAGCATTGGCAAGCCAGTGTTCCTTCAACCACAGATGGTAAAGCAAGCTTTTCACCCAAGCCTCCTGGGGTTTTGGTGAATCAGCAACAGTCATCCACTGGTCTCCCCACACCCCCTGCGCTTTCTTCAGCCACCAGCAATAGTTTGGGGTCTGAGAGGCCACACATTTCCTCATCTTCTGACATGTCCTTGGCACTATCTCAGAGCACTTTTACATTTGATGAATTAGCAAGGGCAACAAATGAATTCTCTGAATCAAATCTTCTTGGTCAAGGTGGTTTTGGCTATGTCCACAAAGGAGTTCTCCCTAATGGAAAAACTGTTGCAGTTAAGCAGCAGAAATCTGAGAGTAGACAAGGGGAGCGTGAGTTTCGTGCGGAAGTTGAGGTCATTAGCCGAGTACATCACAGACATCTGGTTTCCCTAGTTGGATACTGCATCTCAGATGGCCATAGGATGCTTGTCTATGAGTTTGTGCCGAATAAAACACTAGAATTTCATTTGCATGGAAAGGACAGACCGACTATGGACTGGTCAACAAGGATGAGGATTTCTCTAGGATCTGCAAAAGGATTGGCATATCTACATGAAGACTGTAACCCCAAAATCATACACCGTGACATCAAGGCATCTAACATCCTTATTGATAATAGTTTTGAGGCAAAGAATAATGTTCCAGTTTTTGTTGTTCAGGTTGCAGATTTTGGACTTGCCAAATTTTCATCTGACACAGATACCCATGTTTCTACTCGAGTGATGGGAACTTTTGGATATATGGCTCCAGAATATGCAGCTAGTGGCAAACTCACTGCAAAGTCAGATGTTTTCTCCTTTGGTGTTGTGCTTTTGGAGTTGATTACTGGACGAAGGCCTGTTGATAAAACTCAGTCCTTCATTGACGACAGCATGGTTGAATGGGCAAGGCCTTTACTATCCCAAGCTTTGGAAAATGGCAACTTTAATGGACTTGTTGATCCAAGGTTGCAGACGAATTATAATACCGAAGAGATGATTCGCATGACTGCTTGTGCTGCAAGTTGTGTGCGCTATTCATCCAGGCTTCGGCCTAGAATGAGCCAGGTTGTTAGAGCTCTAGAAGGAAATATTTCTCTAGATGATTTAAATGAGGGGAGCACACCTGGGCACAGCAGAGTTTTTGGCTCCTTTGAGAGTTCAAGCTATGATACTGCCCAATACAGTGAAGACCTAAAGAAGTTCAAGAAGTTGGCACTGGAAAGCCAAGAGCATGGCGTTAATGAGTACAGCGGGCCCAGCAGCGAGTATGGTCAACATCCATCTGTCTCGACCAGTTCAGGCCAGCAAAATACACAGGAGATGGAAGTGGGGAATGTGAATGGTAGCAACCATGGTTCTGGGGTGAGCTCATGA 1752 0.4709 MSSPPPETSPGINSTASPPLPTVPTNATASPPSPAVPTTPTNVTPDPFFPEKSPPDKGGLPKGTLDGIIIGVVLGSVGMLIVGGIFIILYRNRKRRRRRNKYSDSPPQPPQPKADQVGGIFQHWQASVPSTTDGKASFSPKPPGVLVNQQQSSTGLPTPPALSSATSNSLGSERPHISSSSDMSLALSQSTFTFDELARATNEFSESNLLGQGGFGYVHKGVLPNGKTVAVKQQKSESRQGEREFRAEVEVISRVHHRHLVSLVGYCISDGHRMLVYEFVPNKTLEFHLHGKDRPTMDWSTRMRISLGSAKGLAYLHEDCNPKIIHRDIKASNILIDNSFEAKNNVPVFVVQVADFGLAKFSSDTDTHVSTRVMGTFGYMAPEYAASGKLTAKSDVFSFGVVLLELITGRRPVDKTQSFIDDSMVEWARPLLSQALENGNFNGLVDPRLQTNYNTEEMIRMTACAASCVRYSSRLRPRMSQVVRALEGNISLDDLNEGSTPGHSRVFGSFESSSYDTAQYSEDLKKFKKLALESQEHGVNEYSGPSSEYGQHPSVSTSSGQQNTQEMEVGNVNGSNHGSGVSS. 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11696 583 Gene3D Transferase(Phosphotransferase) domain 1 280 498 - -
Seca3g11696 583 SMART serkin_6 204 472 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11696 583 MobiDBLite consensus disorder prediction 96 116 - -
Seca3g11696 583 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 85 535 IPR047117 -
Seca3g11696 583 SUPERFAMILY Protein kinase-like (PK-like) 176 486 IPR011009 -
Seca3g11696 583 MobiDBLite consensus disorder prediction 539 583 - -
Seca3g11696 583 MobiDBLite consensus disorder prediction 1 23 - -
Seca3g11696 583 Pfam Protein tyrosine and serine/threonine kinase 208 486 IPR001245 GO:0004672|GO:0006468
Seca3g11696 583 ProSitePatterns Protein kinases ATP-binding region signature. 210 232 IPR017441 GO:0005524
Seca3g11696 583 MobiDBLite consensus disorder prediction 536 583 - -
Seca3g11696 583 Gene3D Phosphorylase Kinase; domain 1 165 279 - -
Seca3g11696 583 ProSitePatterns Serine/Threonine protein kinases active-site signature. 324 336 IPR008271 GO:0004672|GO:0006468
Seca3g11696 583 FunFam Proline-rich receptor-like protein kinase PERK8 176 279 - -
Seca3g11696 583 ProSiteProfiles Protein kinase domain profile. 204 492 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g11696 583 MobiDBLite consensus disorder prediction 24 54 - -
Seca3g11696 583 MobiDBLite consensus disorder prediction 129 182 - -
Seca3g11696 583 FunFam Proline-rich receptor-like protein kinase PERK1 280 497 - -
Seca3g11696 583 MobiDBLite consensus disorder prediction 1 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11696 Seca-Chr3 265430077 265434615 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11696 13 547 Trihelix Transcription Factor Family AT1G70460 48.257 2.73e-157 465
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Seca3g11696 PK_Tyr_Ser-Thr 1.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11696 - - ccaj:109808169 808.905