Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11688 ATGGGCGTCGACATGTCCAACAAACCATCTCCAACTTCTCACACCAAGGACTTGTTTGCCTCTCCAGCTCTCTCTCTCAGCCTTGCTGGGATTTTCCGGCACGCAGGGGAGGCGGTGGAGACGTCAATCGCGGGGGGAAGCAGAGGTGGGCGGCGAGAGGACACCGTTGAGATTAGCAGCGAGAATTCAGGGCACACGAGAAACAAGTCAGATGATGATACATTTGAAGGAGAAGGAGAGCATCATGAGGATCATGATGATGATGATGGTGATGGAGATGAGAACAATAATAAGAAGAAGAAAAGGAAGACTTATCACAGACACACTGCTGAGCAAATTAGAGAAATGGAAGCGCTTTTCAAAGAATCACCTCACCCTGATGAAAAGCAGAGACAACAACTAAGCAAGCAATTAGGCCTTGCTCCAAGGCAAGTCAAGTTTTGGTTCCAAAATCGTCGAACCCAAGTCAAGGCAATACAAGAGCGCCATGAAAATTCATTGTTGAAGACAGAATTAGAGAAACTAAGGGAAGAAAATAGGGCCATGCGAGAGGCCATAAACAAATCTTGTTGCCCCAACTGTGGCATGGCCACAACTAACATAGATGGTTCCAAGTACACCGAAGAAAAACAACTTCGTATTGAAAATGCCTTACTCAAAGCTGAGGTAGAGAAACTTCGAGTAGCCTTAGGAAAATACCCACAAGGGACAACGTCCCCATCATGTTCCGGTGGCCATGATGAGGAAGAGAATAGAAGCTCTTTGGAATTTTACACTGGAATTTTTGGGCTTGAGAAGTCAACTATAATGGAGACAGTGAAGCAAGCAACGGATGAGCTCATAAAGATGGCAAATATGAAGGACCCATTGTGGGTTCGTAGCATTGAGACAGGTCGAGAAATACTTAACTATGATGAATATTTGAAGAAGTTTGGAGCAGGAAATTCATGCAGTCTGAGTCCAAAGAGATTCATTGAGGCCTCAAGAGAGAGTCGTGTTGTTTTTGTGGATCTCCCTCGGCTTCTCCAAACTTTTCTAGATGTGGTAAAAACAAATGGGTGTAATCAATGGAAGGAAATGTTTCCGTGTTTAATATCAAAGGCAGCAACTGTTGATGTTATATGCAATGGAGAAGGTTCTAATAGGAATGGTGCAGTGCAATTGATGTTTGCTGAGTTGCAAATGCTGACTCCAATGGTGCCCACCAGAGAAGTGTATTTTGTCAGGTGTTGCAAACAGTTAAGTGATGAAGAGTGGGCAATCGTTGATGTATCCATAGACAAAGTAGAAGACAACATTGACGCATCCCTTGTGAAATGTAGAAAACGCCCATCTGGTTGCATTATTGAGGATCTGTCAAATGGCCATTGCAAGGTAACTTGGGTGGAGCACTTGGAATGCCAGAAGAGCACAATTCATACAATGTATCGAACCATTGTCAACAGTGGACTAGCCTTTGGGGCAAGGCATTGGATTGCAACACTGAAACATCAATGTGAACGTCTAGTTTTCTACATGGCAACCAATGTTCCCACGAAGGATTCAACTGGTGTTGCCACATCGGCTGGAAGGAAAAGCATTTTGAAGTTGGCACAAAGAATGACATGGAGTTTCTGCCATGCAGTTGGAGCTTCAAGCTTCCACACATGGACCAAGGTCACTAGTAAAACGGGGGATGACATAAGGATTAGTTCAAGGAAGAACTTGAATGATCCTGGTGAACCTCTTGGGGTTATCTTGTCAGCAGTTTGTTCTGTATGGCTTCCTGTCTCTCCTAATGTTCTGTTTGATTTCTTGAGGGATGAAGCTCATCGGACAGAGTGGGATATCATGTTCAGTGGCTGGTCAGTGCAGTCCATGGTAAATTTAGCTAAAGGAAAAGACCAAGGAAATGTTGTAAATATCCAAAAAATACAATCAAAAGAAGACAGTATGTGGATACTACAAGATAGCTGCACAAATGCTTACGAATCAATGGTGGTATATGGTCCTGTGGACTTTACTGGTATCCAGTCTGTGCTGACAGGATGTGATTCAAGTAATCTTGCCATATTGCCATCAGGATTCTCAATTCTTCCTGATGGGGTAGAGGCAAGGCCATTGGTGATCACTTCAAGGCAGGAAGAAAAATGCACAGAAGGAGGGTCTTTATTGACAATGGCATTCCAGATCCTTGCCAATGCTTCTCCAACGGCCAAGTTAACAATGGAATCTGTGGATTCGGTCAAGAATCTTGTGTCTTGTACATTGAGAAATATCAGAACAAGTTTACAATGTGAAGATGATTAG 2289 0.4347 MGVDMSNKPSPTSHTKDLFASPALSLSLAGIFRHAGEAVETSIAGGSRGGRREDTVEISSENSGHTRNKSDDDTFEGEGEHHEDHDDDDGDGDENNNKKKKRKTYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQVKAIQERHENSLLKTELEKLREENRAMREAINKSCCPNCGMATTNIDGSKYTEEKQLRIENALLKAEVEKLRVALGKYPQGTTSPSCSGGHDEEENRSSLEFYTGIFGLEKSTIMETVKQATDELIKMANMKDPLWVRSIETGREILNYDEYLKKFGAGNSCSLSPKRFIEASRESRVVFVDLPRLLQTFLDVVKTNGCNQWKEMFPCLISKAATVDVICNGEGSNRNGAVQLMFAELQMLTPMVPTREVYFVRCCKQLSDEEWAIVDVSIDKVEDNIDASLVKCRKRPSGCIIEDLSNGHCKVTWVEHLECQKSTIHTMYRTIVNSGLAFGARHWIATLKHQCERLVFYMATNVPTKDSTGVATSAGRKSILKLAQRMTWSFCHAVGASSFHTWTKVTSKTGDDIRISSRKNLNDPGEPLGVILSAVCSVWLPVSPNVLFDFLRDEAHRTEWDIMFSGWSVQSMVNLAKGKDQGNVVNIQKIQSKEDSMWILQDSCTNAYESMVVYGPVDFTGIQSVLTGCDSSNLAILPSGFSILPDGVEARPLVITSRQEEKCTEGGSLLTMAFQILANASPTAKLTMESVDSVKNLVSCTLRNIRTSLQCEDD. 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11688 762 ProSitePatterns 'Homeobox' domain signature. 134 157 IPR017970 GO:0000981|GO:0006355
Seca3g11688 762 Coils Coil 158 188 - -
Seca3g11688 762 FunFam Homeobox-leucine zipper protein HDG1 86 175 - -
Seca3g11688 762 SUPERFAMILY Bet v1-like 531 750 - -
Seca3g11688 762 MobiDBLite consensus disorder prediction 40 110 - -
Seca3g11688 762 MobiDBLite consensus disorder prediction 50 81 - -
Seca3g11688 762 ProSiteProfiles 'Homeobox' domain profile. 99 159 IPR001356 GO:0003677
Seca3g11688 762 SUPERFAMILY Bet v1-like 264 501 - -
Seca3g11688 762 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 98 757 IPR042160 -
Seca3g11688 762 CDD START_ArGLABRA2_like 266 500 - -
Seca3g11688 762 SMART START_1 271 501 IPR002913 GO:0008289
Seca3g11688 762 FunFam Homeobox-leucine zipper protein GLABRA 2 271 500 - -
Seca3g11688 762 Gene3D - 345 501 IPR023393 -
Seca3g11688 762 Pfam Homeodomain 102 157 IPR001356 GO:0003677
Seca3g11688 762 SMART HOX_1 101 163 IPR001356 GO:0003677
Seca3g11688 762 CDD homeodomain 106 157 IPR001356 GO:0003677
Seca3g11688 762 SUPERFAMILY Homeodomain-like 88 160 IPR009057 -
Seca3g11688 762 ProSiteProfiles START domain profile. 262 504 IPR002913 GO:0008289
Seca3g11688 762 Pfam START domain 275 501 IPR002913 GO:0008289
Seca3g11688 762 Gene3D - 88 172 - -
Seca3g11688 762 Coils Coil 209 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11688 Seca-Chr3 265394357 265399894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11688 58 761 Homeobox Transcription Factor Family AT1G79840 62.764 0.0 892
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca3g11688 START 2.1e-54 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11688 K09338 - gmx:100806193 1184.09