Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11676 ATGATGGCTGGGAACCCTAACTGGTGGAGTAGTATGCATCCACCATCTTTGATCCCTTCTTCTCAGTATGTGTTTGGATCTTCTTCAATTCCTTTTAACTCTTTGACAGAAAATCATCCTGCAGAGACCCCTCAGTCATTGAGTCAACTTCTTTTCACTGGATTACCAGGAGAAGAAGAGAGATCAGTTGCATTTAGTGATAATTTTCAATCAAAAAAGCTGGAAAACTGGGATGAACATAATATTCTTAATCATCATCCCTCCCCCATAGTTGATGTAATAAAGCAAGAGGTTTCCCAAAGTGGAAACTACTTATTATATCGCCATGGGCATGAGGAATTTCAGGTTTCTGCAGGGTCAACAACATGGTCACATATGGTGCCAGTTTCTTCTTCCCCTAGGTCAAGTGTCGCCACTAGCTTCAGTAGTAGTAATAATAATTTATTGGATTTCACTTATAACAAAGCACCAGCAGATCATAGGAATAACCAACTACCAGATCACACATCTGAGTGTAATAGCAAAGGCAGTGGTGGAGTTTGTAAGAAAACAAGCAGGGGTCAGCCATCTTCAAGCCAACCACCTCTGAAGGTGAGAAAGGAGAAGCTAGGTGATAGAATAACAGCTCTTCACCAGCTAGTTTCCCCCTTTGGAAAGACTGACACAGCTTCAGTCTTGTTGGAAGCCATAGGATATATCAGATTCCTTCAGGGTCAAATTGAGGCACTCAGTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCAACACTCTGTACATGGAGAAAGGAGTTCAGTGTTTCCTGAGGACCCCGGTCAGCTGTTGAATGATGGTAGCCTCAAAAGAAAGGGAGCTCCAAACCAGAAGGATATTGGAAAAGAAAAGGCGGCAAAAGACTTGAGGAGTAGAGGGTTGTGTTTGGTTCCAGTGTCTTGCACACAACATGTTGGAAATGAAACTGGAGCTGATTACTGGGCTCCAGCATATGGCACCGGATTTTAA 1008 0.4266 MMAGNPNWWSSMHPPSLIPSSQYVFGSSSIPFNSLTENHPAETPQSLSQLLFTGLPGEEERSVAFSDNFQSKKLENWDEHNILNHHPSPIVDVIKQEVSQSGNYLLYRHGHEEFQVSAGSTTWSHMVPVSSSPRSSVATSFSSSNNNLLDFTYNKAPADHRNNQLPDHTSECNSKGSGGVCKKTSRGQPSSSQPPLKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQGQIEALSSPYLGNGSKNMRNQHSVHGERSSVFPEDPGQLLNDGSLKRKGAPNQKDIGKEKAAKDLRSRGLCLVPVSCTQHVGNETGADYWAPAYGTGF. 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11676 335 CDD bHLH_AtbHLH_like 197 244 IPR045239 -
Seca3g11676 335 Gene3D - 197 259 IPR036638 GO:0046983
Seca3g11676 335 MobiDBLite consensus disorder prediction 167 195 - -
Seca3g11676 335 MobiDBLite consensus disorder prediction 157 197 - -
Seca3g11676 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 187 236 IPR011598 GO:0046983
Seca3g11676 335 FunFam Transcription factor bHLH123 family 197 260 - -
Seca3g11676 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 197 248 IPR036638 GO:0046983
Seca3g11676 335 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 67 317 - -
Seca3g11676 335 MobiDBLite consensus disorder prediction 254 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11676 Seca-Chr3 265286892 265289789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11676 57 276 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 47.059 1.06e-44 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11676 - - gmx:100802121 457.988