Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g11674 ATGGCTTGCATAGCATTTGGGCGCTTGGATGATTCTTTCAGTTTGGGCTCAATCAAGGCCTATATTGCTGAGTTCATCTCAACCTTGCTCTTTGTTTTTGCTGGTGTTGGTTCAGCCATAGCCTACGTCTCTTTATTTGCAGGTAAGTTGACATCAGATGCAGCTCTTGATCCTACTGGGTTAGTAGCAATTGCTGTTTGCCATGGTTTTGCTCTCTTTGTTGCTGTTTCTGTTGGTGCCAACATTTCTGGTGGACATGTCAACCCTGCTGTGACCTTTGGATTGGCTCTTGGTGGCCAGATCACAATCCTCACTGGTATCTTCTACTGGATTGCACAGCTCCTTGGTTCCATAGTAGCATGTTTTCTTCTCCAGTTTGTTACAGGAGGCTTGGAAACTCCTATCCACAGTGTGGCTGCTGGAGTTGGAGCTGTTGGAGGAGTTGTTACAGAGATCATTATCACATTTGGTTTGGTTTACACAGTGTATGCCACAGCAGCTGACCCAAAGAAGGGCTCATTGGGGACCATTGCACCCATTGCCATTGGTTTCATTGTTGGTGCAAACATCTTAGCAGCAGGGCCATTCTCTGGAGGGTCAATGAACCCTGCACGCTCCTTTGGCCCTGCAGTTGTTAGTGGTAACTTCCATGACAACTGGATCTACTGGGTTGGACCTCTAATTGGGGGTGGTTTGGCTGGCCTTATCTATGGCAATGTGTTCATGCGCTCTGAGCATGCTCCTCTTGCCAGTGAATTTTGA 762 0.4738 MACIAFGRLDDSFSLGSIKAYIAEFISTLLFVFAGVGSAIAYVSLFAGKLTSDAALDPTGLVAIAVCHGFALFVAVSVGANISGGHVNPAVTFGLALGGQITILTGIFYWIAQLLGSIVACFLLQFVTGGLETPIHSVAAGVGAVGGVVTEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGNFHDNWIYWVGPLIGGGLAGLIYGNVFMRSEHAPLASEF. 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g11674 253 FunFam Probable aquaporin TIP1-1 2 253 - -
Seca3g11674 253 Pfam Major intrinsic protein 15 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca3g11674 253 SUPERFAMILY Aquaporin-like 14 247 IPR023271 -
Seca3g11674 253 ProSitePatterns MIP family signature. 86 94 IPR022357 -
Seca3g11674 253 CDD MIP 19 240 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca3g11674 253 PANTHER AQUAPORIN-8 4 246 IPR034294 -
Seca3g11674 253 Gene3D Glycerol uptake facilitator protein. 2 252 IPR023271 -
Seca3g11674 253 PRINTS Major intrinsic protein family signature 220 240 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca3g11674 253 PRINTS Major intrinsic protein family signature 183 205 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca3g11674 253 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca3g11674 253 PRINTS Major intrinsic protein family signature 150 168 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca3g11674 253 PRINTS Major intrinsic protein family signature 68 92 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca3g11674 253 PRINTS Major intrinsic protein family signature 105 124 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca3g11674 253 NCBIfam MIP family channel protein 23 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g11674 Seca-Chr3 265266014 265268684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g11674 1 251 Major Intrinsic Protein MIP AT3G16240 81.349 4.30e-142 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g11674 K09873 - gmx:100306092 424.476